Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 4.6e-95 351.3 187 100.0
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 6.7e-94 347.4 187 98.9
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 7.9e-87 323.9 187 93.6
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 8.7e-86 320.5 185 90.8
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 2.5e-85 318.9 185 89.7
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.7e-81 306.2 185 88.6
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.1e-79 299.3 185 85.9
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 4.6e-79 298.1 185 83.8
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 1.1e-77 293.5 185 82.2
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 1.5e-77 293.1 173 90.8
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.5e-77 292.4 185 81.6
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 2.5e-77 292.4 185 82.2
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 4.3e-77 291.6 185 82.7
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 9.7e-77 290.4 185 82.7
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 9.7e-77 290.4 185 83.8
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 2.2e-76 289.3 185 82.7
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 2.8e-76 288.9 185 81.1
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 2.8e-76 288.9 190 82.6
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 3.7e-76 288.5 185 80.5
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 4.8e-76 288.1 186 82.3
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 6.3e-76 287.7 173 85.0
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 8.2e-76 287.3 185 80.5
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 1.1e-75 287.0 169 88.8
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.4e-75 286.6 171 86.0
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.4e-75 286.6 185 80.0
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 1.4e-75 286.6 185 80.0
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 4.1e-75 285.0 185 79.5
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 5.3e-75 284.6 185 80.5
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 9.1e-75 283.9 185 78.4
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.0e-74 282.7 185 77.8
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 2.0e-74 282.7 185 78.9
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 1.0e-73 280.4 186 79.6
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.0e-73 280.4 187 79.1
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 2.2e-73 279.3 193 77.2
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 5.0e-73 278.1 185 78.4
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 6.5e-73 277.7 187 79.1
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 6.5e-73 277.7 185 80.5
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.4e-72 276.6 185 79.5
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 2.5e-72 275.8 187 79.1
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 7.2e-72 274.2 189 76.7
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.6e-71 271.9 186 76.3
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 4.7e-71 271.6 197 73.1
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 4.7e-71 271.6 197 73.1
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 6.1e-71 271.2 185 77.8
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.4e-70 270.0 197 72.6
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 2.3e-70 269.2 189 76.7
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 3.9e-70 268.5 193 73.1
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 3.9e-70 268.5 193 73.1
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 3.9e-70 268.5 169 81.1
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 5.1e-70 268.1 186 76.9
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 8.8e-70 267.3 151 90.1
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.1e-69 266.9 190 75.3
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.1e-69 266.9 196 74.0
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.1e-69 266.9 185 77.3
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.5e-69 266.5 186 75.8
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.0e-69 266.2 187 75.9
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 7.4e-69 264.2 201 71.1
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 9.7e-69 263.8 195 71.8
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.3e-68 263.5 187 75.4
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 1.3e-68 263.5 152 86.8
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 1.3e-68 263.5 187 75.9
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 1.7e-68 263.1 153 86.3
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.7e-68 263.1 185 77.3
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 2.2e-68 262.7 185 75.7
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.2e-68 262.7 196 73.5
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 2.8e-68 262.3 185 74.6
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 2.8e-68 262.3 187 75.4
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 3.7e-68 261.9 185 74.1
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.7e-68 261.9 187 74.9
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 4.8e-68 261.5 185 77.3
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.4e-67 260.0 189 72.5
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.4e-67 260.0 187 73.8
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 4.1e-67 258.5 186 73.7
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 4.1e-67 258.5 196 70.9
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 5.3e-67 258.1 171 77.2
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 9.1e-67 257.3 185 75.7
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 9.1e-67 257.3 186 77.4
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 3.5e-66 255.4 186 71.5
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 4.5e-66 255.0 201 69.2
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 4.5e-66 255.0 187 74.9
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 5.9e-66 254.6 186 72.6
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 7.7e-66 254.2 193 70.5
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 7.7e-66 254.2 193 69.4
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.0e-65 253.8 191 71.7
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 1.0e-65 253.8 187 73.8
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 1.3e-65 253.4 186 72.0
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.7e-65 253.1 187 73.3
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.7e-65 253.1 190 71.6
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 2.9e-65 252.3 187 73.3
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 2.9e-65 252.3 160 79.4
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 2.9e-65 252.3 186 72.6
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 5.0e-65 251.5 185 71.9
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 1.9e-64 249.6 186 72.0
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.9e-64 249.6 165 79.4
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 2.5e-64 249.2 186 72.6
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 3.2e-64 248.8 195 69.7
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 5.5e-64 248.1 188 71.8
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 5.5e-64 248.1 204 67.6
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 5.5e-64 248.1 185 70.3
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 8.0e-63 244.2 186 69.4
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 3.0e-62 242.3 147 84.4
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 3.0e-62 242.3 183 71.6
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 6.7e-62 241.1 158 77.8
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 8.8e-62 240.7 166 75.3
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 1.1e-61 240.4 188 67.6
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 5.7e-61 238.0 135 94.1
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 5.7e-61 238.0 168 75.6
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 7.5e-61 237.7 191 67.0
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 1.3e-60 236.9 185 69.7
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 1.7e-60 236.5 155 76.8
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 3.7e-60 235.3 187 69.5
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 4.8e-60 235.0 195 65.6
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.1e-59 233.8 185 68.1
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 1.8e-59 233.0 186 69.4
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.8e-59 233.0 188 67.6
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 2.4e-59 232.6 189 67.2
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 3.1e-59 232.3 169 74.0
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 7.0e-59 231.1 252 56.7
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 7.0e-59 231.1 154 77.3
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 4.5e-58 228.4 152 75.0
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.5e-58 228.4 187 67.9
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 7.7e-58 227.6 171 73.7
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 1.0e-57 227.3 168 72.0
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 9.4e-56 220.7 159 71.1
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 1.4e-54 216.9 178 68.0
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 8.3e-52 207.6 187 62.6
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 1.1e-51 207.2 148 70.9
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 2.4e-51 206.1 170 67.1
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 2.7e-50 202.6 187 62.6
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 5.9e-50 201.4 187 62.0
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 2.5e-48 196.1 230 53.9
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 4.2e-48 195.3 147 68.0
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 2.0e-45 186.4 144 69.4
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 5.4e-43 178.3 132 69.7
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 7.0e-43 177.9 178 59.6
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 2.0e-42 176.4 164 61.0
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.8e-41 172.2 100 84.0
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 5.0e-41 171.8 105 76.2
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 5.6e-40 168.3 185 55.1
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.2e-37 160.6 131 67.2
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 4.4e-37 158.7 152 52.0
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.4e-37 158.7 130 63.8
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.7e-36 156.8 131 64.9
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.7e-36 155.6 131 64.9
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 8.3e-36 154.5 140 52.1
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.2e-35 152.5 131 65.6
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 3.5e-34 149.1 82 86.6
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.3e-33 147.1 93 74.2
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 2.8e-31 139.4 103 65.0
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 3.6e-31 139.0 170 44.1
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 3.6e-31 139.0 177 43.5
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 1.4e-30 137.1 151 49.7
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 3.1e-30 136.0 115 61.7
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 1.2e-26 124.0 177 45.8
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 7.8e-26 121.3 123 62.6
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 4.9e-20 102.1 87 67.8
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 9.5e-16 87.8 58 72.4
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.9e-11 73.6 80 62.5
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 2.4e-11 73.2 180 37.8
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 5.4e-11 72.0 104 49.0
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 5.2e-06 55.5 43 60.5
RcHm_v2.0_Chr2g0098501 Rosa chinensis HOM05D004525 ORTHO05D005295 6.8e-06 55.1 89 40.4


User provided reference genes

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