Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03925 Corylus avellana HOM05D007928 ORTHO05D009207 2.2e-69 265.4 124 100.0
Cfa006837 Carpinus fangiana HOM05D007928 ORTHO05D009207 2.2e-53 212.2 99 96.0
COL.COLO4_11686 Corchorus olitorius HOM05D007928 ORTHO05D009207 5.9e-30 134.4 106 68.9
CiPaw.07G043300 Carya illinoinensis HOM05D007928 ORTHO05D009207 5.0e-29 131.3 87 69.0
CiPaw.08G144700 Carya illinoinensis HOM05D007928 ORTHO05D009207 6.5e-29 131.0 103 68.0
Thecc.01G084700 Theobroma cacao HOM05D007928 ORTHO05D009207 2.5e-28 129.0 106 67.0
Duzib147G1143 Durio zibethinus HOM05D007928 ORTHO05D009207 3.2e-28 128.6 95 72.6
TAR628G0787 Trochodendron aralioides HOM05D007928 ORTHO05D009207 6.1e-27 124.4 77 75.3
Manes.12G121900 Manihot esculenta HOM05D007928 ORTHO05D009207 3.3e-25 118.6 84 72.6
RcHm_v2.0_Chr2g0110091 Rosa chinensis HOM05D007928 ORTHO05D009207 7.5e-25 117.5 96 63.5
Prupe.6G209000 Prunus persica HOM05D007928 ORTHO05D009207 3.7e-24 115.2 97 60.8
Gohir.D11G215100 Gossypium hirsutum HOM05D007928 ORTHO05D009207 1.4e-23 113.2 110 59.1
Gorai.007G230900 Gossypium raimondii HOM05D007928 ORTHO05D009207 1.4e-23 113.2 110 59.1
VMungo1215G2120 Vigna mungo HOM05D007928 ORTHO05D009207 1.8e-23 112.8 83 65.1
Gohir.A11G208300 Gossypium hirsutum HOM05D007928 ORTHO05D009207 2.4e-23 112.5 110 59.1
Phvul.002G143700 Phaseolus vulgaris HOM05D007928 ORTHO05D009207 2.4e-23 112.5 83 66.3
FvH4_1g19100 Fragaria vesca HOM05D007928 ORTHO05D009207 4.1e-23 111.7 98 62.2
FAN19G2807 Fragaria x ananassa HOM05D007928 ORTHO05D009207 4.1e-23 111.7 98 62.2
FAN26G1033 Fragaria x ananassa HOM05D007928 ORTHO05D009207 5.3e-23 111.3 97 61.9
Lalb_Chr16g0381521 Lupinus albus HOM05D007928 ORTHO05D009207 1.2e-22 110.2 84 64.3
Atru.chr3.1179 Acer truncatum HOM05D007928 ORTHO05D009207 4.5e-22 108.2 109 55.0
Nn5g29796 Nelumbo nucifera HOM05D007928 ORTHO05D009207 4.5e-22 108.2 89 64.0
Glyma.09G201900 Glycine max HOM05D007928 ORTHO05D009207 5.9e-22 107.8 82 63.4
Glyma.01G020400 Glycine max HOM05D007928 ORTHO05D009207 1.7e-21 106.3 92 59.8
Gorai.007G058100 Gossypium raimondii HOM05D007928 ORTHO05D009207 1.7e-21 106.3 104 60.6
Gorai.008G088800 Gossypium raimondii HOM05D007928 ORTHO05D009207 3.8e-21 105.1 96 58.3
Gohir.A12G082800 Gossypium hirsutum HOM05D007928 ORTHO05D009207 5.0e-21 104.8 81 69.1
Oeu054747.1 Olea europaea HOM05D007928 ORTHO05D009207 5.0e-21 104.8 93 61.3
Cpa.g.sc129.13 Carica papaya HOM05D007928 ORTHO05D009207 6.5e-21 104.4 117 56.4
Medtr5g030990 Medicago truncatula HOM05D007928 ORTHO05D009207 1.5e-20 103.2 91 57.1
Lj2g0015328 Lotus japonicus HOM05D007928 ORTHO05D009207 1.9e-20 102.8 90 62.2
GSVIVG01003863001 Vitis vinifera HOM05D007928 ORTHO05D009207 3.2e-20 102.1 100 54.0
MBI16_g14338_MAGBIO Magnolia biondii HOM05D007928 ORTHO05D009207 9.4e-20 100.5 87 58.6
TPR.G37018 Trifolium pratense HOM05D007928 ORTHO05D009207 9.4e-20 100.5 91 58.2
MBI16_g36545_MAGBIO Magnolia biondii HOM05D007928 ORTHO05D009207 1.6e-19 99.8 87 57.5
Nitab4.5_0000036g0450 Nicotiana tabacum HOM05D007928 ORTHO05D009207 1.6e-19 99.8 104 53.8
CsaV3_6G044800 Cucumis sativus L. HOM05D007928 ORTHO05D009207 3.6e-19 98.6 90 58.9
Nn1g05659 Nelumbo nucifera HOM05D007928 ORTHO05D009207 2.3e-18 95.9 84 57.1
Cc07_g07960 Coffea canephora HOM05D007928 ORTHO05D009207 3.0e-18 95.5 86 57.0
Gohir.A11G049900 Gossypium hirsutum HOM05D007928 ORTHO05D009207 3.0e-18 95.5 87 62.1
Actinidia16387 Actinidia chinensis HOM05D007928 ORTHO05D009207 5.2e-18 94.7 84 59.5
ClCG01G018220 Citrullus lanatus HOM05D007928 ORTHO05D009207 5.2e-18 94.7 88 60.2
Solyc02g063380.1 Solanum lycopersicum HOM05D007928 ORTHO05D009207 6.8e-18 94.4 96 54.2
Ciclev10026783m.g Citrus clementina HOM05D007928 ORTHO05D009207 8.8e-18 94.0 98 58.2
Oeu030822.1 Olea europaea HOM05D007928 ORTHO05D009207 8.8e-18 94.0 86 58.1
FAN23G2934 Fragaria x ananassa HOM05D007928 ORTHO05D009207 1.5e-17 93.2 85 60.0
Rhsim08G0088100 Rhododendron simsii HOM05D007928 ORTHO05D009207 1.5e-17 93.2 96 53.1
Lalb_Chr09g0325821 Lupinus albus HOM05D007928 ORTHO05D009207 3.4e-17 92.0 99 55.6
Sopen02g014470 Solanum pennellii HOM05D007928 ORTHO05D009207 3.4e-17 92.0 98 53.1
MELO3C007699.2 Cucumis melo HOM05D007928 ORTHO05D009207 5.7e-17 91.3 91 56.0
PGSC0003DMG400010390 Solanum tuberosum HOM05D007928 ORTHO05D009207 1.3e-16 90.1 97 52.6
Nitab4.5_0007512g0040 Nicotiana tabacum HOM05D007928 ORTHO05D009207 2.2e-16 89.4 89 52.8
Nitab4.5_0003051g0030 Nicotiana tabacum HOM05D007928 ORTHO05D009207 2.8e-16 89.0 106 50.9
Dinv36974 Davidia involucrata HOM05D007928 ORTHO05D009207 6.3e-16 87.8 72 63.9
MBI16_g07262_MAGBIO Magnolia biondii HOM05D007928 ORTHO05D009207 6.3e-16 87.8 91 56.0
Peaxi162Scf00703g00018 Petunia axillaris HOM05D007928 ORTHO05D009207 1.1e-15 87.0 89 55.1
Peaxi162Scf00943g00053 Petunia axillaris HOM05D007928 ORTHO05D009207 1.8e-15 86.3 103 52.4
Migut.H00287 Erythranthe guttata HOM05D007928 ORTHO05D009207 1.2e-14 83.6 98 54.1
Oeu050985.1 Olea europaea HOM05D007928 ORTHO05D009207 4.5e-14 81.6 84 53.6
SGA_v2.0_scaffold149G36512 Striga asiatica HOM05D007928 ORTHO05D009207 4.5e-14 81.6 82 53.7
SalBow3G1764 Salvia bowleyana HOM05D007928 ORTHO05D009207 5.9e-14 81.3 71 57.7
SalBow3G2359 Salvia bowleyana HOM05D007928 ORTHO05D009207 5.9e-14 81.3 71 57.7
arahy.Tifrunner.gnm1.ann1.WFP9WJ Arachis hypogaea HOM05D007928 ORTHO05D009207 1.0e-13 80.5 117 42.7
Migut.L00450 Erythranthe guttata HOM05D007928 ORTHO05D009207 1.3e-13 80.1 101 50.5
Sed0007366 Sechium edule HOM05D007928 ORTHO05D009207 2.9e-13 79.0 89 50.6
Psat2g133800 Pisum sativum HOM05D007928 ORTHO05D009207 6.5e-13 77.8 83 55.4
CDE01G0331 Ceratophyllum demersum HOM05D007928 ORTHO05D009207 3.2e-12 75.5 74 50.0
Lsat_1_v5_gn_3_81040 Lactuca sativa HOM05D007928 ORTHO05D009207 1.2e-11 73.6 99 47.5
arahy.Tifrunner.gnm1.ann1.K7GD79 Arachis hypogaea HOM05D007928 ORTHO05D009207 1.0e-10 70.5 99 42.4
arahy.Tifrunner.gnm1.ann1.ZD5YIK Arachis hypogaea HOM05D007928 ORTHO05D009207 1.0e-10 70.5 99 42.4
Sed0026702 Sechium edule HOM05D007928 ORTHO05D009207 1.4e-10 70.1 99 45.5
Ah.03g134340 Amaranthus hybridus HOM05D007928 ORTHO05D009207 5.2e-10 68.2 96 50.0
THA.LOC109116076 Tarenaya hassleriana HOM05D013367 ORTHO05D009207 5.2e-10 68.2 102 46.1
Lsat_1_v5_gn_4_157020 Lactuca sativa HOM05D007928 ORTHO05D009207 2.0e-09 66.2 90 48.9
Lsat_1_v5_gn_4_157500 Lactuca sativa HOM05D007928 ORTHO05D009207 4.4e-09 65.1 90 48.9
Sp2g28700 Schrenkiella parvula HOM05D013367 ORTHO05D009207 2.2e-08 62.8 87 50.6
C03p60140 Brassica napus HOM05D013367 ORTHO05D009207 3.7e-08 62.0 89 49.4
BolC3t18278H Brassica oleracea HOM05D013367 ORTHO05D009207 3.7e-08 62.0 89 49.4
PGSC0003DMG400030657 Solanum tuberosum HOM05D007928 ORTHO05D009207 4.9e-08 61.6 106 43.4
AL8G43200 Arabidopsis lyrata HOM05D013367 ORTHO05D009207 1.8e-07 59.7 101 43.6
Sc03g0000550 Simmondsia chinensis HOM05D007928 ORTHO05D009207 1.8e-07 59.7 95 44.2
ECA232G2728 Erigeron canadensis HOM05D011897 ORTHO05D009207 2.4e-07 59.3 86 47.7
EL10Ac6g13311 Beta vulgaris HOM05D007928 ORTHO05D009207 3.1e-07 58.9 104 40.4
AL112U10020 Arabidopsis lyrata HOM05D013367 ORTHO05D009207 4.1e-07 58.5 106 44.3
A06p32450 Brassica napus HOM05D013367 ORTHO05D009207 4.1e-07 58.5 87 48.3
BraA06t26169Z Brassica rapa HOM05D013367 ORTHO05D009207 4.1e-07 58.5 87 48.3
Os05g0516100 Oryza sativa ssp. japonica HOM05D021016 ORTHO05D023053 9.2e-07 57.4 96 39.6
Thhalv10005166m.g Eutrema salsugineum HOM05D013367 ORTHO05D009207 1.6e-06 56.6 88 45.5
Sopen02g036180 Solanum pennellii HOM05D007928 ORTHO05D009207 4.5e-06 55.1 96 42.7
Lsat_1_v5_gn_4_157180 Lactuca sativa HOM05D011897 ORTHO05D009207 7.7e-06 54.3 86 41.9
Lsat_1_v5_gn_4_157220 Lactuca sativa HOM05D011897 ORTHO05D009207 7.7e-06 54.3 86 41.9


User provided reference genes

Program Settings