Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 0.0e+00 1279.6 653 100.0
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 0.0e+00 1243.8 653 96.0
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 3.9e-298 1027.7 658 78.9
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 9.5e-297 1023.1 654 79.4
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 1.2e-275 953.0 665 73.5
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.5e-265 919.5 657 72.0
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 1.5e-265 919.5 652 72.9
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 2.6e-262 908.7 649 71.8
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 7.6e-262 907.1 657 71.1
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 2.9e-261 905.2 652 71.0
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 3.8e-261 904.8 655 71.1
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 4.2e-260 901.4 654 71.3
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.0e-254 882.5 651 68.5
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 2.3e-250 869.0 645 69.8
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 3.9e-250 868.2 655 68.2
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 6.7e-250 867.5 673 67.6
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.8e-248 862.1 621 71.3
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 1.2e-246 856.7 639 69.5
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 1.5e-246 856.3 655 66.1
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 1.0e-245 853.6 661 67.6
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 1.0e-245 853.6 663 65.8
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 1.0e-245 853.6 663 67.9
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 7.2e-244 847.4 656 67.1
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 1.2e-243 846.7 674 66.0
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 7.9e-243 844.0 667 68.1
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 5.1e-242 841.3 643 67.7
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 7.4e-241 837.4 662 63.6
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 9.7e-241 837.0 647 67.5
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 1.3e-240 836.6 656 68.3
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 8.2e-240 833.9 642 66.7
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 1.8e-239 832.8 648 67.3
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 5.3e-239 831.2 650 66.9
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 9.1e-239 830.5 650 66.6
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 1.5e-238 829.7 660 66.7
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 2.6e-238 828.9 658 65.8
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.5e-238 828.2 662 66.2
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 2.9e-237 825.5 664 65.4
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 3.8e-237 825.1 656 66.8
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 3.8e-237 825.1 656 66.8
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 1.4e-236 823.2 642 65.3
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 3.2e-236 822.0 659 63.4
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 1.6e-235 819.7 652 66.0
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 6.1e-235 817.8 662 65.3
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 3.3e-233 812.0 644 64.9
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 4.4e-233 811.6 670 65.7
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 2.8e-232 808.9 634 65.1
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 3.1e-231 805.4 655 65.3
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 9.1e-231 803.9 700 61.3
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 1.6e-230 803.1 645 64.0
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 3.5e-230 802.0 648 64.7
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 5.9e-230 801.2 661 63.8
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 5.9e-230 801.2 647 63.7
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 1.0e-229 800.4 651 62.2
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 1.0e-229 800.4 657 64.2
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 1.5e-225 786.6 648 62.7
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 4.8e-224 781.6 651 61.6
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 2.2e-221 772.7 642 62.0
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 2.5e-220 769.2 652 62.9
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 2.5e-220 769.2 662 60.6
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 7.2e-220 767.7 648 62.7
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.6e-219 766.5 686 60.2
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 2.1e-219 766.1 651 61.4
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 1.8e-218 763.1 646 59.9
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 2.6e-217 759.2 647 62.1
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 4.8e-216 755.0 610 64.6
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 9.1e-215 750.7 655 60.6
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 1.2e-214 750.4 653 61.1
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 4.5e-214 748.4 651 60.2
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 7.7e-214 747.7 643 60.7
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 1.7e-213 746.5 646 59.8
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 2.3e-213 746.1 665 59.5
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 1.1e-212 743.8 650 60.9
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 2.5e-212 742.7 656 59.6
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 3.3e-212 742.3 644 60.9
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 8.0e-211 737.6 655 59.5
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.4e-210 736.9 659 59.6
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 4.4e-209 731.9 659 59.5
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 9.8e-209 730.7 654 58.9
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 9.5e-204 714.1 597 63.8
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 2.8e-203 712.6 530 71.3
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 6.8e-202 708.0 639 58.2
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 2.0e-201 706.4 493 71.8
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 7.5e-201 704.5 569 65.9
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 8.3e-200 701.0 533 67.2
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 2.0e-198 696.4 656 57.0
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.5e-193 680.2 648 57.7
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 1.1e-191 674.1 682 53.4
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 1.5e-185 653.7 498 65.9
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 1.0e-181 641.0 662 53.5
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 2.3e-181 639.8 532 64.1
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 3.0e-181 639.4 497 62.8
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 5.6e-180 635.2 687 52.4
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 1.3e-173 614.0 663 50.1
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 5.8e-169 598.6 695 47.6
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.9e-165 585.9 609 54.4
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.9e-159 567.0 541 56.0
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 4.8e-155 552.4 486 61.1
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.4e-138 497.7 645 43.7
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 2.0e-137 493.8 439 61.0
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 2.5e-132 476.9 536 52.2
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 1.1e-122 444.9 751 37.7
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 2.5e-119 433.7 681 40.2
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 3.2e-111 406.8 280 69.6
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 2.1e-110 404.1 292 74.3
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.0e-109 401.7 388 59.5
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.5e-103 381.3 595 40.2
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 3.1e-98 363.6 342 57.3
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.2e-97 361.7 339 60.2
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 9.5e-95 352.1 293 66.6
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 9.8e-92 342.0 651 35.9
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 1.6e-89 334.7 290 64.8
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 8.0e-86 322.4 430 50.2
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 6.0e-81 306.2 494 38.9
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.0e-72 277.3 329 49.2
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.9e-66 258.1 205 67.3
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 8.6e-64 249.2 381 43.6
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 1.9e-63 248.1 177 69.5
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 3.3e-63 247.3 384 44.0
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 6.6e-56 223.0 149 73.8
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 2.8e-54 217.6 195 59.0
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 9.3e-50 202.6 155 64.5
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 2.1e-41 174.9 121 66.1
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 9.6e-39 166.0 323 32.8
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 6.9e-37 159.8 681 28.5
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 1.3e-27 129.0 177 44.6
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.7e-19 102.1 96 54.2
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 3.2e-18 97.8 61 83.6
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 1.1e-15 89.4 63 68.3
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 7.4e-15 86.7 98 52.0
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 9.7e-15 86.3 164 38.4
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 9.7e-15 86.3 92 48.9
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 1.4e-13 82.4 63 63.5
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.8e-13 82.0 57 66.7
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 3.1e-13 81.3 111 43.2
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 9.1e-13 79.7 55 69.1
Cre03.g145667 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 4.8e-06 57.4 105 34.3


User provided reference genes

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