Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 3.1e-147 525.0 252 100.0
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.3e-63 247.3 230 60.9
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 4.1e-62 242.3 229 60.7
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 1.2e-53 214.2 232 53.9
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 4.2e-51 205.7 163 68.1
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 8.0e-50 201.4 229 53.7
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 1.4e-49 200.7 225 52.0
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 2.3e-49 199.9 231 46.3
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 3.0e-49 199.5 226 50.4
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 5.2e-49 198.7 216 50.5
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 8.8e-49 198.0 237 52.3
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 1.5e-48 197.2 218 49.1
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 2.0e-48 196.8 240 49.6
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 2.2e-47 193.4 226 47.3
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 2.8e-47 193.0 237 47.3
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 2.4e-46 189.9 225 46.7
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 2.4e-46 189.9 219 46.1
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 2.4e-46 189.9 227 46.3
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 5.3e-46 188.7 246 45.9
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 1.6e-45 187.2 225 48.9
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 1.6e-45 187.2 229 46.3
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 1.6e-45 187.2 226 49.6
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 1.5e-43 180.6 217 47.5
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 1.9e-43 180.3 222 48.6
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 3.2e-43 179.5 196 50.5
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 4.2e-43 179.1 232 46.1
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 1.6e-42 177.2 230 44.3
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 1.6e-42 177.2 230 44.3
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 1.6e-42 177.2 230 44.3
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 1.6e-42 177.2 230 44.3
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 1.6e-42 177.2 230 44.3
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 2.1e-42 176.8 205 47.8
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 8.0e-42 174.9 211 49.3
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 8.0e-42 174.9 211 49.3
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 8.0e-42 174.9 224 45.5
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 1.4e-41 174.1 213 46.9
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 1.8e-41 173.7 217 48.8
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 5.2e-41 172.2 226 46.0
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 6.8e-41 171.8 201 47.8
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 8.8e-41 171.4 200 47.0
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 8.8e-41 171.4 225 45.3
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 8.8e-41 171.4 234 43.6
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 1.5e-40 170.6 228 46.5
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 2.0e-40 170.2 208 45.7
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.6e-40 169.9 210 48.6
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 4.4e-40 169.1 228 44.3
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 4.4e-40 169.1 202 46.5
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 5.7e-40 168.7 249 41.8
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 9.8e-40 167.9 214 45.3
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.7e-39 167.2 207 48.8
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 1.7e-39 167.2 206 46.6
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 2.2e-39 166.8 229 43.7
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 2.2e-39 166.8 207 44.0
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 4.8e-39 165.6 225 47.6
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 6.3e-39 165.2 222 43.2
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 8.3e-39 164.9 224 42.4
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 1.4e-38 164.1 204 47.5
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 1.4e-38 164.1 206 42.2
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.8e-38 163.7 229 43.7
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 9.1e-38 161.4 216 46.8
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 1.2e-37 161.0 234 44.4
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.6e-37 160.6 210 47.1
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 1.6e-37 160.6 238 41.6
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 2.0e-37 160.2 207 45.4
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 2.0e-37 160.2 207 44.0
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 4.5e-37 159.1 224 43.3
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 4.5e-37 159.1 203 45.3
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 5.9e-37 158.7 225 43.1
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 1.0e-36 157.9 225 42.2
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.7e-36 157.1 200 42.0
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 3.8e-36 156.0 204 45.1
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 5.0e-36 155.6 194 45.4
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 8.6e-36 154.8 226 41.6
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 1.5e-35 154.1 306 36.6
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 1.5e-35 154.1 200 46.5
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 1.5e-35 154.1 230 41.3
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 1.9e-35 153.7 223 41.3
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 1.9e-35 153.7 232 40.9
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 1.9e-35 153.7 204 44.1
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 2.5e-35 153.3 230 42.6
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 2.5e-35 153.3 207 43.5
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 3.3e-35 152.9 240 42.1
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 5.5e-35 152.1 205 44.4
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 5.5e-35 152.1 233 39.1
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 5.5e-35 152.1 229 39.3
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 5.5e-35 152.1 222 41.0
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 1.6e-34 150.6 195 45.1
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 2.1e-34 150.2 223 43.9
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 3.6e-34 149.4 195 44.1
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.6e-34 149.4 230 43.0
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 3.6e-34 149.4 219 38.4
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 6.1e-34 148.7 195 44.6
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 8.0e-34 148.3 206 43.2
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 2.3e-33 146.7 221 42.1
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 3.0e-33 146.4 198 41.9
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.2e-32 144.4 234 40.2
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.0e-32 143.7 220 41.4
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 3.4e-32 142.9 223 39.0
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 3.4e-32 142.9 200 41.0
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 4.4e-32 142.5 216 38.0
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 7.5e-32 141.7 221 38.5
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.7e-31 140.6 224 42.0
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 4.9e-31 139.0 214 39.7
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 8.3e-31 138.3 223 38.1
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 1.1e-30 137.9 208 40.4
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 1.4e-30 137.5 203 39.4
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 1.4e-30 137.5 208 40.9
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 3.2e-30 136.3 183 44.3
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 4.1e-30 136.0 320 32.8
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 4.1e-30 136.0 208 42.3
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 2.0e-29 133.7 217 39.6
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.0e-29 133.7 212 40.1
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 2.0e-29 133.7 194 39.2
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.5e-29 132.5 220 37.7
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 2.3e-28 130.2 217 39.6
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 3.3e-27 126.3 206 37.9
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 4.3e-27 125.9 181 41.4
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 5.6e-27 125.6 162 46.3
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 9.5e-27 124.8 159 48.4
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 1.2e-26 124.4 162 45.1
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.2e-26 124.4 169 45.0
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 4.7e-26 122.5 156 43.6
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 6.1e-26 122.1 200 40.0
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 8.0e-26 121.7 213 35.2
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 5.2e-25 119.0 175 42.9
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.5e-24 117.5 176 42.0
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 2.0e-24 117.1 208 33.7
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 7.5e-24 115.2 123 51.2
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 2.2e-23 113.6 106 52.8
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 2.7e-21 106.7 165 39.4
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 4.6e-21 105.9 117 46.2
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 7.8e-21 105.1 101 52.5
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 7.8e-21 105.1 152 42.8
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 8.6e-20 101.7 68 70.6
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.1e-19 101.3 207 33.8
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 1.9e-19 100.5 187 35.8
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 3.3e-19 99.8 223 36.3
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 8.0e-18 95.1 195 35.4
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.1e-17 94.7 199 31.7
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 4.0e-17 92.8 162 36.4
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 2.0e-16 90.5 219 31.5
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 9.8e-16 88.2 100 44.0
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.7e-15 87.4 203 28.1
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 2.9e-15 86.7 270 28.9
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.1e-14 84.7 209 29.7
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.9e-14 84.0 193 31.1
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 2.1e-13 80.5 111 41.4
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 1.7e-12 77.4 162 32.7
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 1.1e-11 74.7 118 36.4
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 1.8e-09 67.4 48 64.6
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 4.0e-09 66.2 46 63.0
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 8.9e-09 65.1 152 30.3
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 2.9e-07 60.1 46 60.9


User provided reference genes

Program Settings