Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 2.1e-101 372.5 199 100.0
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 7.1e-86 320.9 181 96.7
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 2.5e-67 259.2 182 81.3
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 1.4e-62 243.4 183 78.1
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 1.8e-60 236.5 186 75.8
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 2.0e-59 233.0 186 74.7
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 3.3e-59 232.3 182 76.4
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 1.5e-56 223.4 186 74.2
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 7.2e-54 214.5 183 71.6
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 9.4e-54 214.2 185 70.3
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 7.9e-53 211.1 182 70.9
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.0e-52 210.7 182 70.9
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.0e-52 210.7 187 70.6
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 1.0e-52 210.7 189 70.9
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 2.3e-52 209.5 179 69.3
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 3.9e-52 208.8 181 70.2
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 8.8e-52 207.6 192 67.2
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 8.8e-52 207.6 192 67.2
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 1.1e-51 207.2 186 67.2
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 1.1e-49 200.7 187 69.5
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 3.1e-49 199.1 190 68.9
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 3.1e-49 199.1 189 65.1
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 3.5e-48 195.7 190 64.7
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 3.5e-48 195.7 189 67.7
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 1.3e-47 193.7 188 64.9
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 1.7e-47 193.4 186 67.7
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 2.9e-47 192.6 190 64.7
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 8.5e-47 191.0 189 64.6
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 1.1e-46 190.7 187 64.7
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 5.5e-46 188.3 185 66.5
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 7.2e-46 188.0 181 63.5
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 1.6e-45 186.8 183 65.6
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 8.0e-45 184.5 184 62.5
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 1.4e-44 183.7 159 68.6
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.4e-44 183.7 186 62.4
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.8e-44 183.3 185 64.9
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 1.8e-44 183.3 183 65.0
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.0e-44 182.6 183 65.6
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.0e-44 182.6 190 62.6
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.0e-44 182.2 183 65.6
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 5.2e-44 181.8 183 65.6
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 5.2e-44 181.8 189 63.5
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 8.8e-44 181.0 201 62.7
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.5e-43 180.3 182 64.8
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 1.5e-43 180.3 182 65.4
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 7.5e-43 177.9 193 61.1
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 9.7e-43 177.6 183 61.7
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 9.7e-43 177.6 187 62.0
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 2.2e-42 176.4 182 58.2
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.2e-42 176.4 185 65.4
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 6.3e-42 174.9 183 63.4
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 8.2e-42 174.5 192 59.4
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.4e-41 173.7 211 56.9
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.8e-41 173.3 188 62.2
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.8e-41 173.3 185 64.3
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 1.8e-41 173.3 185 64.3
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.8e-41 173.3 157 67.5
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.4e-41 172.9 189 59.8
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.3e-41 171.8 189 61.9
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 7.0e-41 171.4 184 61.4
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 2.0e-40 169.9 183 60.1
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.0e-40 169.9 163 63.8
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 3.5e-40 169.1 193 58.5
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.5e-40 168.7 185 61.6
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 4.5e-40 168.7 188 60.1
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 7.7e-40 167.9 185 61.6
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.0e-39 167.5 187 61.0
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.7e-39 166.8 185 62.7
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 6.5e-39 164.9 184 57.1
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.9e-38 163.3 183 57.9
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.5e-38 162.9 187 59.9
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.5e-38 162.9 187 59.9
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 2.5e-38 162.9 182 61.5
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 2.5e-38 162.9 186 57.0
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 5.5e-38 161.8 185 60.0
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 7.2e-38 161.4 181 58.0
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 9.4e-38 161.0 184 59.8
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 1.2e-37 160.6 181 59.7
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.6e-37 160.2 175 56.0
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 1.4e-36 157.1 192 60.4
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 6.8e-36 154.8 174 56.3
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.2e-35 154.1 186 57.0
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.0e-35 153.3 182 58.8
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 4.4e-35 152.1 183 57.9
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 7.5e-35 151.4 188 53.7
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 7.5e-35 151.4 152 62.5
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 9.8e-35 151.0 183 60.7
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 1.3e-34 150.6 177 55.9
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 1.3e-34 150.6 178 59.0
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.3e-34 150.6 186 57.0
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.8e-34 148.7 186 57.0
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 4.8e-34 148.7 183 55.7
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 8.3e-34 147.9 187 53.5
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 5.4e-33 145.2 184 48.9
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 9.1e-33 144.4 189 49.7
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 1.2e-32 144.1 181 57.5
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-32 144.1 160 60.6
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 1.2e-32 144.1 180 55.0
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 1.6e-32 143.7 181 56.4
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.6e-32 143.7 160 60.6
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.7e-32 142.9 179 54.7
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.7e-32 142.9 159 59.7
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 3.5e-32 142.5 167 53.9
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 4.5e-32 142.1 129 72.1
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 7.7e-32 141.4 159 57.2
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.0e-31 141.0 194 52.6
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 1.7e-31 140.2 180 56.1
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.8e-31 139.0 152 61.8
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 5.0e-31 138.7 180 55.6
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 5.0e-31 138.7 160 57.5
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 3.2e-30 136.0 130 70.8
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 4.2e-30 135.6 184 52.2
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 5.5e-30 135.2 184 57.1
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.6e-29 133.7 187 55.1
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 1.6e-29 133.7 184 51.6
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 3.6e-29 132.5 198 52.0
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 4.7e-29 132.1 197 51.3
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 6.1e-29 131.7 188 54.3
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 8.0e-29 131.3 190 48.4
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 8.0e-29 131.3 190 47.9
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 1.0e-28 131.0 166 56.0
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 1.4e-28 130.6 182 52.7
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 1.8e-28 130.2 179 51.4
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 8.8e-28 127.9 165 50.9
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 2.0e-27 126.7 119 61.3
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 4.4e-27 125.6 184 51.1
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 4.4e-27 125.6 184 51.1
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 7.5e-27 124.8 151 55.0
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 2.2e-26 123.2 186 50.0
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.8e-26 122.9 159 53.5
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 6.3e-26 121.7 164 52.4
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 3.1e-25 119.4 160 52.5
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 4.1e-25 119.0 192 44.8
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 9.2e-25 117.9 101 66.3
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 1.2e-24 117.5 177 51.4
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 2.0e-24 116.7 185 51.4
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 2.0e-24 116.7 185 51.4
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 5.9e-24 115.2 177 47.5
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 7.8e-24 114.8 186 50.0
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.0e-23 114.4 148 56.1
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 3.8e-23 112.5 187 44.9
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.9e-22 110.2 182 50.0
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 7.3e-22 108.2 155 46.5
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 2.8e-21 106.3 138 52.9
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 4.7e-21 105.5 186 44.6
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 6.1e-21 105.1 184 45.1
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 6.1e-21 105.1 159 53.5
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 8.0e-21 104.8 118 60.2
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 1.8e-20 103.6 181 45.3
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 2.3e-20 103.2 188 41.5
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 3.0e-20 102.8 166 47.6
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.0e-20 102.4 156 50.6
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 5.2e-20 102.1 152 45.4
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 2.0e-19 100.1 166 47.6
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.0e-19 100.1 126 58.7
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 2.6e-19 99.8 152 50.0
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 4.4e-19 99.0 137 49.6
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.3e-18 97.4 156 49.4
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 2.2e-18 96.7 99 61.6
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 4.9e-18 95.5 137 48.2
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.1e-17 94.4 156 48.7
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 1.1e-17 94.4 160 46.9
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.8e-17 93.6 181 44.8
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 4.3e-14 82.4 121 47.9
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.6e-13 80.5 144 45.1
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.6e-13 80.5 144 45.1
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 6.2e-13 78.6 175 41.1
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 8.9e-12 74.7 58 74.1
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.0e-11 73.6 58 72.4
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.3e-10 70.9 107 44.9
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 8.3e-10 68.2 109 44.0
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.0e-08 63.5 122 44.3
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 1.0e-07 61.2 84 50.0
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.7e-07 60.5 132 38.6
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.3e-06 55.8 47 66.0


User provided reference genes

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