Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03743 Corylus avellana HOM05D004074 ORTHO05D004717 2.2e-34 148.3 70 100.0
Nn6g31693 Nelumbo nucifera HOM05D004074 ORTHO05D004717 4.3e-30 134.0 67 89.6
Nn8g40291 Nelumbo nucifera HOM05D004074 ORTHO05D004717 4.3e-30 134.0 67 89.6
TWI77G0047 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 4.3e-30 134.0 71 88.7
Actinidia00635 Actinidia chinensis HOM05D004074 ORTHO05D004717 9.7e-30 132.9 67 89.6
Actinidia25993 Actinidia chinensis HOM05D004074 ORTHO05D004717 9.7e-30 132.9 67 89.6
Actinidia38792 Actinidia chinensis HOM05D004074 ORTHO05D004717 9.7e-30 132.9 67 88.1
Duzib264G1024 Durio zibethinus HOM05D004074 ORTHO05D004717 9.7e-30 132.9 67 88.1
AT1G51650 Arabidopsis thaliana HOM05D004074 ORTHO05D004717 1.3e-29 132.5 69 88.4
Manes.05G195000 Manihot esculenta HOM05D004074 ORTHO05D004717 1.3e-29 132.5 69 87.0
Nn5g30428 Nelumbo nucifera HOM05D004074 ORTHO05D004717 1.3e-29 132.5 67 88.1
Sed0005809 Sechium edule HOM05D004074 ORTHO05D004717 1.3e-29 132.5 69 88.4
AL1G59560 Arabidopsis lyrata HOM05D004074 ORTHO05D004717 1.7e-29 132.1 69 87.0
CARHR041810 Cardamine hirsuta HOM05D004074 ORTHO05D004717 1.7e-29 132.1 69 88.4
ClCG09G001480 Citrullus lanatus HOM05D004074 ORTHO05D004717 2.2e-29 131.7 69 85.5
TWI53G1078 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 2.2e-29 131.7 71 85.9
A08p02600 Brassica napus HOM05D004074 ORTHO05D004717 3.7e-29 131.0 69 88.4
BraA08t32299Z Brassica rapa HOM05D004074 ORTHO05D004717 3.7e-29 131.0 69 88.4
CsaV3_7G033840 Cucumis sativus L. HOM05D004074 ORTHO05D004717 3.7e-29 131.0 69 85.5
TPR.G2285 Trifolium pratense HOM05D004074 ORTHO05D004717 3.7e-29 131.0 67 86.6
Duzib147G0570 Durio zibethinus HOM05D004074 ORTHO05D004717 4.8e-29 130.6 67 85.1
Gohir.A11G055200 Gossypium hirsutum HOM05D004074 ORTHO05D004717 4.8e-29 130.6 67 86.6
Gohir.D11G059000 Gossypium hirsutum HOM05D004074 ORTHO05D004717 4.8e-29 130.6 67 86.6
Gohir.D12G001400 Gossypium hirsutum HOM05D004074 ORTHO05D004717 4.8e-29 130.6 67 86.6
Gorai.007G063900 Gossypium raimondii HOM05D004074 ORTHO05D004717 4.8e-29 130.6 67 86.6
Psat1g059640 Pisum sativum HOM05D004074 ORTHO05D004717 4.8e-29 130.6 69 84.1
MELO3C024297.2 Cucumis melo HOM05D004074 ORTHO05D004717 6.3e-29 130.2 69 84.1
Actinidia31138 Actinidia chinensis HOM05D004074 ORTHO05D004717 8.2e-29 129.8 67 86.6
Actinidia21867 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.1e-28 129.4 67 83.6
CDE02G0689 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 1.1e-28 129.4 67 85.1
Gorai.008G000800 Gossypium raimondii HOM05D004074 ORTHO05D004717 1.1e-28 129.4 67 85.1
CiPaw.01G088100 Carya illinoinensis HOM05D004074 ORTHO05D004717 1.4e-28 129.0 67 83.6
Cc01_g08930 Coffea canephora HOM05D004074 ORTHO05D004717 1.4e-28 129.0 67 85.1
FvH4_6g37330 Fragaria vesca HOM05D004074 ORTHO05D004717 1.4e-28 129.0 67 83.6
Hund11291 Selenicereus undatus HOM05D004074 ORTHO05D004717 1.4e-28 129.0 70 85.7
PGSC0003DMG402009187 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.4e-28 129.0 67 83.6
BcaB04g17185 Brassica carinata HOM05D004074 ORTHO05D004717 1.8e-28 128.6 69 87.0
HanXRQChr10g0311531 Helianthus annuus HOM05D004074 ORTHO05D004717 1.8e-28 128.6 67 82.1
Medtr5g040610 Medicago truncatula HOM05D004074 ORTHO05D004717 1.8e-28 128.6 69 82.6
BcaB04g19151 Brassica carinata HOM05D004074 ORTHO05D004717 2.4e-28 128.3 69 82.6
BcaC01g03518 Brassica carinata HOM05D004074 ORTHO05D004717 2.4e-28 128.3 69 82.6
A05p19470 Brassica napus HOM05D004074 ORTHO05D004717 2.4e-28 128.3 69 85.5
BraA05t20851Z Brassica rapa HOM05D004074 ORTHO05D004717 2.4e-28 128.3 69 85.5
CDE05G2863 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 2.4e-28 128.3 67 83.6
Gohir.A12G001600 Gossypium hirsutum HOM05D004074 ORTHO05D004717 2.4e-28 128.3 67 83.6
Phvul.008G255900 Phaseolus vulgaris HOM05D004074 ORTHO05D004717 2.4e-28 128.3 67 82.1
Psat7g263760 Pisum sativum HOM05D004074 ORTHO05D004717 2.4e-28 128.3 67 83.6
Sp3g19200 Schrenkiella parvula HOM05D004074 ORTHO05D004717 2.4e-28 128.3 69 82.6
Sopen12g024230 Solanum pennellii HOM05D004074 ORTHO05D004717 2.4e-28 128.3 67 83.6
PGSC0003DMG400028842 Solanum tuberosum HOM05D004074 ORTHO05D004717 2.4e-28 128.3 67 83.6
BcaB04g20604 Brassica carinata HOM05D004074 ORTHO05D004717 3.1e-28 127.9 69 84.1
BcaNung05296 Brassica carinata HOM05D004074 ORTHO05D004717 3.1e-28 127.9 69 84.1
Thhalv10011901m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 3.1e-28 127.9 69 87.0
A01p33680 Brassica napus HOM05D004074 ORTHO05D004717 4.1e-28 127.5 68 83.8
FAN02G0872 Fragaria x ananassa HOM05D004074 ORTHO05D004717 4.1e-28 127.5 67 82.1
FAN05G0051 Fragaria x ananassa HOM05D004074 ORTHO05D004717 4.1e-28 127.5 67 82.1
FAN09G3199 Fragaria x ananassa HOM05D004074 ORTHO05D004717 4.1e-28 127.5 67 82.1
CARHR097100 Cardamine hirsuta HOM05D004074 ORTHO05D004717 5.3e-28 127.1 69 82.6
HanXRQChr12g0359921 Helianthus annuus HOM05D004074 ORTHO05D004717 5.3e-28 127.1 67 80.6
Nitab4.5_0007548g0020 Nicotiana tabacum HOM05D004074 ORTHO05D004717 5.3e-28 127.1 67 82.1
Solyc06g063220.3 Solanum lycopersicum HOM05D004074 ORTHO05D004717 5.3e-28 127.1 67 82.1
Solyc12g055760.2 Solanum lycopersicum HOM05D004074 ORTHO05D004717 5.3e-28 127.1 67 82.1
Sopen06g022670 Solanum pennellii HOM05D004074 ORTHO05D004717 5.3e-28 127.1 67 82.1
BolC1t04251H Brassica oleracea HOM05D004074 ORTHO05D004717 6.9e-28 126.7 69 82.6
BraA01t03480Z Brassica rapa HOM05D004074 ORTHO05D004717 9.1e-28 126.3 68 82.4
MD09G1158500 Malus domestica HOM05D004074 ORTHO05D004717 9.1e-28 126.3 69 78.3
PGR102G2231 Punica granatum HOM05D004074 ORTHO05D004717 9.1e-28 126.3 67 83.6
BcaB02g11264 Brassica carinata HOM05D004074 ORTHO05D004717 1.2e-27 125.9 69 84.1
Prupe.3G167500 Prunus persica HOM05D004074 ORTHO05D004717 1.2e-27 125.9 69 78.3
Sp1g38290 Schrenkiella parvula HOM05D004074 ORTHO05D004717 1.2e-27 125.9 66 86.4
C01p43050 Brassica napus HOM05D004074 ORTHO05D004717 1.5e-27 125.6 69 81.2
ECA234G0987 Erigeron canadensis HOM05D004074 ORTHO05D004717 1.5e-27 125.6 67 82.1
Hma1.2p1_0039F.1_g024790 Hydrangea macrophylla HOM05D004074 ORTHO05D004717 1.5e-27 125.6 69 84.1
Hund14448 Selenicereus undatus HOM05D004074 ORTHO05D004717 2.0e-27 125.2 68 82.4
CSS0037999 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 2.6e-27 124.8 67 80.6
CSS0039874 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 2.6e-27 124.8 67 80.6
Dinv20359 Davidia involucrata HOM05D004074 ORTHO05D004717 2.6e-27 124.8 69 82.6
Migut.I01175 Erythranthe guttata HOM05D004074 ORTHO05D004717 2.6e-27 124.8 67 80.6
Glyma.07G003700 Glycine max HOM05D004074 ORTHO05D004717 2.6e-27 124.8 67 80.6
Duzib187G1118 Durio zibethinus HOM05D004074 ORTHO05D004717 4.5e-27 124.0 67 82.1
BcaC08g43926 Brassica carinata HOM05D004074 ORTHO05D004717 5.9e-27 123.6 69 82.6
C06p13180 Brassica napus HOM05D004074 ORTHO05D004717 5.9e-27 123.6 69 82.6
BolC6t36474H Brassica oleracea HOM05D004074 ORTHO05D004717 5.9e-27 123.6 69 82.6
Carub.0001s4049 Capsella rubella HOM05D004074 ORTHO05D004717 5.9e-27 123.6 69 82.6
Lj3g0011227 Lotus japonicus HOM05D004074 ORTHO05D004717 5.9e-27 123.6 62 87.1
PGSC0003DMG400026508 Solanum tuberosum HOM05D004074 ORTHO05D004717 5.9e-27 123.6 67 79.1
Ciclev10026787m.g Citrus clementina HOM05D004074 ORTHO05D004717 1.3e-26 122.5 60 91.7
unitig_748.g7476 Utricularia gibba HOM05D004074 ORTHO05D004717 1.3e-26 122.5 67 79.1
RcHm_v2.0_Chr2g0150171 Rosa chinensis HOM05D004074 ORTHO05D004717 1.7e-26 122.1 67 79.1
vmacro18761 Vaccinium macrocarpon HOM05D004074 ORTHO05D004717 2.9e-26 121.3 60 88.3
Dinv37799 Davidia involucrata HOM05D004074 ORTHO05D004717 3.8e-26 120.9 65 83.1
Lalb_Chr25g0278611 Lupinus albus HOM05D004074 ORTHO05D004717 3.8e-26 120.9 65 80.0
Aa31LG10G3130 Aethionema arabicum HOM05D004074 ORTHO05D004717 6.5e-26 120.2 69 78.3
BolC3t17439H Brassica oleracea HOM05D000606 ORTHO05D001265 8.5e-26 119.8 65 81.5
BraA03t13364Z Brassica rapa HOM05D000606 ORTHO05D001265 8.5e-26 119.8 65 81.5
Glyma.08G222900 Glycine max HOM05D004074 ORTHO05D004717 8.5e-26 119.8 74 74.3
THA.LOC104821596 Tarenaya hassleriana HOM05D004074 ORTHO05D004717 1.1e-25 119.4 67 79.1
Cpa.g.sc1009.1 Carica papaya HOM05D004074 ORTHO05D004717 1.9e-25 118.6 59 88.1
Lsat_1_v5_gn_4_88780 Lactuca sativa HOM05D004074 ORTHO05D004717 1.9e-25 118.6 66 78.8
FAN14G4331 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.5e-25 118.2 59 86.4
Peaxi162Scf00038g02442 Petunia axillaris HOM05D004074 ORTHO05D004717 2.5e-25 118.2 60 85.0
unitig_32.g11555 Utricularia gibba HOM05D004074 ORTHO05D004717 2.5e-25 118.2 67 76.1
Thecc.01G124200 Theobroma cacao HOM05D004074 ORTHO05D004717 3.2e-25 117.9 59 88.1
TAR626G1506 Trochodendron aralioides HOM05D004074 ORTHO05D004717 3.2e-25 117.9 59 88.1
COL.COLO4_13992 Corchorus olitorius HOM05D004074 ORTHO05D004717 4.2e-25 117.5 60 85.0
Nitab4.5_0001691g0090 Nicotiana tabacum HOM05D004074 ORTHO05D004717 4.2e-25 117.5 59 86.4
Nitab4.5_0002885g0120 Nicotiana tabacum HOM05D004074 ORTHO05D004717 4.2e-25 117.5 59 86.4
Rhsim08G0247900 Rhododendron simsii HOM05D004074 ORTHO05D004717 4.2e-25 117.5 59 86.4
QL05p083316 Quercus lobata HOM05D004074 ORTHO05D004717 5.5e-25 117.1 58 89.7
VMungo0647G0339 Vigna mungo HOM05D001270 ORTHO05D001099 5.5e-25 117.1 60 85.0
CANSAT01G1956 Cannabis sativa HOM05D004074 ORTHO05D004717 7.2e-25 116.7 67 76.1
Thhalv10021996m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 7.2e-25 116.7 59 86.4
BolC8t49078H Brassica oleracea HOM05D004074 ORTHO05D004717 1.2e-24 115.9 66 78.8
CAN.G1073.1 Capsicum annuum HOM05D004074 ORTHO05D004717 1.6e-24 115.5 63 79.4
Potri.010G250000 Populus trichocarpa HOM05D004074 ORTHO05D004717 1.6e-24 115.5 65 76.9
TAR383G0992 Trochodendron aralioides HOM05D004074 ORTHO05D004717 1.6e-24 115.5 59 86.4
Aqoxy7G03184 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 2.1e-24 115.2 66 77.3
Potri.008G008900 Populus trichocarpa HOM05D004074 ORTHO05D004717 2.1e-24 115.2 65 76.9
Zm00001eb161770 Zea mays HOM05D004074 ORTHO05D004717 2.1e-24 115.2 67 76.1
arahy.Tifrunner.gnm1.ann1.9ZAP4M Arachis hypogaea HOM05D004074 ORTHO05D004717 2.7e-24 114.8 63 77.8
Nitab4.5_0008628g0040 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.7e-24 114.8 60 80.0
Nitab4.5_0000357g0290 Nicotiana tabacum HOM05D004074 ORTHO05D004717 3.6e-24 114.4 61 78.7
Nitab4.5_0002661g0050 Nicotiana tabacum HOM05D004074 ORTHO05D004717 3.6e-24 114.4 59 81.4
Rhsim06G0076700 Rhododendron simsii HOM05D004074 ORTHO05D004717 3.6e-24 114.4 59 84.7
Zm00001eb357940 Zea mays HOM05D004074 ORTHO05D004717 4.7e-24 114.0 67 74.6
EL10Ac5g12205 Beta vulgaris HOM05D004074 ORTHO05D004717 6.1e-24 113.6 59 88.1
DCAR_007668 Daucus carota HOM05D004074 ORTHO05D004717 7.9e-24 113.2 63 77.8
PSO170G4934 Papaver somniferum HOM05D004074 ORTHO05D004717 7.9e-24 113.2 66 75.8
PSO339G3796 Papaver somniferum HOM05D004074 ORTHO05D004717 7.9e-24 113.2 66 75.8
Aqoxy5G02869 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 1.4e-23 112.5 63 79.4
ATR0580G305 Amborella trichopoda HOM05D004074 ORTHO05D004717 2.3e-23 111.7 63 74.6
Oeu040350.2 Olea europaea HOM05D004074 ORTHO05D004717 2.3e-23 111.7 59 79.7
Sabra10G0194600 Salix brachista HOM05D004074 ORTHO05D004717 2.3e-23 111.7 59 83.1
BcaC09g49057 Brassica carinata HOM05D004074 ORTHO05D004717 3.0e-23 111.3 59 81.4
CAN.G790.25 Capsicum annuum HOM05D004074 ORTHO05D004717 3.0e-23 111.3 60 78.3
Ah.07g199420 Amaranthus hybridus HOM05D004074 ORTHO05D004717 3.9e-23 110.9 59 81.4
BcaC03g13642 Brassica carinata HOM05D000239 ORTHO05D004717 3.9e-23 110.9 64 76.6
Eucgr.F04009 Eucalyptus grandis HOM05D004074 ORTHO05D004717 5.1e-23 110.5 66 75.8
C02p10320 Brassica napus HOM05D004074 ORTHO05D004717 8.8e-23 109.8 63 77.8
MBI04_g18036_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 8.8e-23 109.8 61 73.8
Os08g0250200 Oryza sativa ssp. japonica HOM05D004074 ORTHO05D004717 8.8e-23 109.8 64 75.0
Aa31LG8G7900 Aethionema arabicum HOM05D004074 ORTHO05D004717 1.1e-22 109.4 60 78.3
AUR62018789 Chenopodium quinoa HOM05D004074 ORTHO05D004717 1.1e-22 109.4 69 73.9
QL05p083267 Quercus lobata HOM05D004074 ORTHO05D004717 2.0e-22 108.6 59 78.0
SHI21232 Sapria himalayana HOM05D004074 ORTHO05D004717 2.0e-22 108.6 69 69.6
HPP92_021730 Vanilla planifolia HOM05D004074 ORTHO05D004717 2.0e-22 108.6 60 76.7
SGA_v2.0_scaffold122G33290 Striga asiatica HOM05D004074 ORTHO05D004717 2.6e-22 108.2 58 77.6
Sabra08G0005100 Salix brachista HOM05D004074 ORTHO05D004717 3.3e-22 107.8 59 79.7
BcaC08g44915 Brassica carinata HOM05D004074 ORTHO05D004717 4.4e-22 107.5 66 71.2
C06p25410 Brassica napus HOM05D004074 ORTHO05D004717 5.7e-22 107.1 59 76.3
BolC6t37702H Brassica oleracea HOM05D004074 ORTHO05D004717 5.7e-22 107.1 59 76.3
GSVIVG01037184001 Vitis vinifera HOM05D004074 ORTHO05D004717 1.7e-21 105.5 62 79.0
AagrBONN_evm.TU.Sc2ySwM_117.3571 Anthoceros agrestis HOM05D004074 ORTHO05D004717 9.1e-20 99.8 68 63.2
SGA_v2.0_scaffold71G24013 Striga asiatica HOM05D001270 ORTHO05D001099 2.0e-19 98.6 58 70.7
SEGI_28642 Sequoiadendron giganteum HOM05D004074 ORTHO05D004717 2.6e-19 98.2 62 59.7
AagrBONN_evm.TU.Sc2ySwM_344.1495 Anthoceros agrestis HOM05D004074 ORTHO05D004717 4.5e-19 97.4 68 61.8
GSVIVG01037963001 Vitis vinifera HOM05D004074 ORTHO05D004717 1.7e-18 95.5 46 93.5
HPP92_021648 Vanilla planifolia HOM05D004074 ORTHO05D004717 5.5e-17 90.5 59 67.8
MBI14_g24286_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 2.7e-16 88.2 47 76.6
SalBow6G5392 Salvia bowleyana HOM05D004074 ORTHO05D004717 3.6e-16 87.8 48 72.9
Thhalv10022333m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 1.0e-15 86.3 65 63.1
Pp3c1_12120 Physcomitrium patens HOM05D004074 ORTHO05D004717 6.7e-15 83.6 63 54.0
Pp3c2_24870 Physcomitrium patens HOM05D004074 ORTHO05D004717 6.7e-15 83.6 63 54.0
Lsat_1_v5_gn_5_137500 Lactuca sativa HOM05D001270 ORTHO05D001099 8.8e-15 83.2 55 67.3
Mapoly0001s0230 Marchantia polymorpha HOM05D004074 ORTHO05D004717 8.8e-15 83.2 68 51.5
SMO351G0623 Selaginella moellendorffii HOM05D004074 ORTHO05D004717 1.5e-14 82.4 56 58.9
C02p45000 Brassica napus HOM05D000128 ORTHO05D000059 3.3e-14 81.3 43 81.4
MCO11G253 Micromonas commoda HOM05D004074 ORTHO05D004717 1.7e-13 79.0 66 50.0
Zm00001eb394860 Zea mays HOM05D004074 ORTHO05D004717 6.3e-13 77.0 53 62.3
Pp3c1_10140 Physcomitrium patens HOM05D004074 ORTHO05D004717 9.1e-12 73.2 52 61.5
PRCOL_00000946 Prasinoderma coloniale HOM05D004074 ORTHO05D004717 9.1e-12 73.2 54 57.4
Medtr4g005960 Medicago truncatula HOM05D004074 ORTHO05D004717 2.0e-11 72.0 62 51.6
PSO455G0136 Papaver somniferum HOM05D004074 ORTHO05D004717 5.0e-10 67.4 56 58.9
Cre10.g420700 Chlamydomonas reinhardtii HOM05D004074 ORTHO05D004717 5.5e-09 63.9 50 52.0
QL05p083294 Quercus lobata HOM05D004074 ORTHO05D004717 5.2e-07 57.4 67 47.8
SGA_v2.0_scaffold234G43604 Striga asiatica HOM05D004074 ORTHO05D405016 4.4e-06 54.3 31 71.0


User provided reference genes

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