Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 0.0e+00 1278.8 803 100.0
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 4.8e-266 921.4 808 75.0
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 1.0e-247 860.5 841 70.4
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 3.1e-241 839.0 805 68.0
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 1.8e-236 823.2 807 71.9
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 2.0e-219 766.5 795 65.0
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 7.3e-214 748.0 815 60.4
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 4.7e-213 745.3 813 64.8
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 5.8e-211 738.4 805 65.7
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 1.1e-209 734.2 815 62.3
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 3.2e-209 732.6 807 64.8
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 2.3e-207 726.5 812 65.4
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 1.4e-204 717.2 796 63.1
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 9.9e-203 711.1 789 64.4
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 6.4e-202 708.4 796 63.3
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 8.6e-199 698.0 807 64.8
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 1.1e-198 697.6 804 65.5
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 2.5e-198 696.4 789 64.8
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 4.3e-198 695.7 812 64.9
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 4.3e-198 695.7 789 64.5
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 9.6e-198 694.5 799 57.3
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.8e-196 690.3 804 62.4
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 9.9e-195 684.5 750 65.3
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 4.9e-194 682.2 800 61.5
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 2.4e-193 679.9 757 66.1
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 2.4e-193 679.9 757 65.9
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 4.2e-193 679.1 778 60.3
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 1.2e-192 677.6 805 62.9
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 3.5e-192 676.0 806 61.0
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 1.3e-191 674.1 804 63.9
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 2.3e-191 673.3 813 62.5
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 3.9e-191 672.5 814 61.5
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 1.9e-190 670.2 812 59.7
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.5e-190 669.8 807 64.1
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 3.3e-190 669.5 807 63.9
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 2.1e-189 666.8 817 63.4
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 4.9e-186 655.6 813 56.7
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 3.2e-185 652.9 782 61.5
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 1.6e-184 650.6 519 72.3
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 6.0e-184 648.7 808 62.4
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 3.0e-183 646.4 805 60.5
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 1.1e-182 644.4 802 62.7
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 2.5e-182 643.3 811 59.9
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 3.7e-181 639.4 812 59.5
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 3.7e-181 639.4 812 59.5
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 9.9e-179 631.3 806 56.6
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 9.9e-179 631.3 805 57.9
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 4.9e-178 629.0 799 59.8
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 1.2e-176 624.4 767 62.6
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 4.3e-174 615.9 775 59.6
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 1.8e-172 610.5 801 58.6
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 3.1e-172 609.8 812 53.3
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 5.8e-171 605.5 802 54.5
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 7.1e-169 598.6 822 53.8
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 3.5e-168 596.3 816 58.2
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 3.5e-168 596.3 812 57.1
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 6.7e-167 592.0 819 59.2
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.5e-166 590.9 835 56.8
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 2.1e-165 587.0 809 51.3
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 2.8e-165 586.6 774 57.8
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 3.7e-165 586.3 822 55.2
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 1.4e-164 584.3 801 53.7
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 1.8e-164 583.9 805 53.9
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 1.8e-164 583.9 785 53.5
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 2.4e-164 583.6 809 54.4
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 7.6e-163 578.6 745 61.7
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 7.6e-163 578.6 745 61.7
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.1e-161 574.7 754 58.6
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 4.6e-160 569.3 808 57.9
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 1.8e-159 567.4 761 59.0
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 5.1e-159 565.8 812 55.7
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 8.7e-159 565.1 818 54.3
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 3.3e-158 563.1 728 59.5
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 7.4e-158 562.0 799 57.2
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 8.2e-157 558.5 759 58.6
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 3.1e-156 556.6 859 50.9
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 5.3e-156 555.8 757 58.0
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 1.2e-155 554.7 752 57.8
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 5.0e-154 549.3 798 54.5
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 2.5e-153 547.0 778 53.3
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 3.2e-153 546.6 798 54.0
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 1.8e-151 540.8 802 52.0
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 1.7e-149 534.3 807 56.5
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 1.7e-149 534.3 802 51.2
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 8.5e-146 521.9 805 49.9
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 3.2e-145 520.0 810 53.0
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 5.9e-139 499.2 789 50.4
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 2.2e-138 497.3 750 48.9
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 1.5e-137 494.6 812 53.0
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 3.2e-137 493.4 502 60.8
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.5e-134 484.6 815 51.8
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 3.3e-134 483.4 810 52.0
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 6.3e-133 479.2 810 51.6
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 9.1e-132 475.3 768 51.6
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 1.1e-124 451.8 754 51.1
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 2.6e-118 430.6 420 63.1
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 2.7e-115 420.6 795 43.5
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 1.0e-106 392.1 792 47.7
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 9.2e-100 369.0 782 40.9
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 4.1e-92 343.6 590 54.9
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 7.1e-92 342.8 588 54.8
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 5.2e-87 326.6 573 41.5
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 2.9e-85 320.9 765 34.4
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 4.6e-83 313.5 275 63.6
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 3.9e-82 310.5 835 37.6
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.4e-79 302.0 255 66.3
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 6.6e-74 283.1 190 83.2
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 1.2e-70 272.3 533 50.8
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 9.6e-65 252.7 194 71.1
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.3e-64 252.3 194 75.3
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 6.9e-63 246.5 792 30.4
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.2e-53 214.9 515 35.5
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 8.7e-50 203.0 132 83.3
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 1.8e-47 195.3 137 85.4
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 1.4e-44 185.7 123 83.7
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 9.4e-44 183.0 389 55.3
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 3.0e-42 177.9 821 27.5
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.7e-40 172.2 187 55.6
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 5.0e-37 160.6 178 53.9
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-36 158.7 320 38.4
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 3.2e-36 157.9 166 60.2
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 3.2e-28 131.3 130 58.5
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 6.3e-24 117.1 154 49.4
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 6.3e-24 117.1 143 53.1
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 4.1e-23 114.4 159 47.2
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 1.7e-21 109.0 95 71.6
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 1.4e-18 99.4 79 59.5
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 2.3e-18 98.6 78 73.1
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 2.0e-17 95.5 163 39.3
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.3e-16 92.8 56 87.5
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 2.4e-15 88.6 54 83.3
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 3.5e-14 84.7 270 55.6
Glyma.18G186501 Glycine max HOM05D001343 ORTHO05D007223 6.5e-13 80.5 70 67.1
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 6.1e-11 73.9 169 38.5
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 1.4e-10 72.8 169 37.3
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 6.8e-10 70.5 96 45.8
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 2.0e-09 68.9 66 62.1
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 2.6e-09 68.6 47 72.3
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 4.4e-09 67.8 47 78.7
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 6.3e-08 63.9 52 71.2
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 2.7e-06 58.5 92 39.1


User provided reference genes

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