Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 0.0e+00 2987.2 1542 100.0
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 0.0e+00 1597.8 881 94.9
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 0.0e+00 1310.0 884 78.2
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 0.0e+00 1267.7 880 76.6
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 0.0e+00 1107.8 837 72.3
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 3.6e-310 1068.9 881 65.0
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 1.1e-306 1057.4 892 65.4
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 1.2e-302 1043.9 885 63.5
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 5.2e-301 1038.5 889 63.2
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 4.4e-300 1035.4 888 64.4
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 4.4e-300 1035.4 888 64.6
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 2.4e-298 1029.6 886 64.6
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 1.9e-295 1020.0 885 62.7
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 3.6e-294 1015.8 885 63.4
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 4.7e-294 1015.4 850 64.9
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 8.0e-294 1014.6 889 63.3
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 3.0e-293 1012.7 879 62.8
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 6.8e-293 1011.5 890 61.8
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.6e-286 990.3 875 61.6
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 8.0e-286 988.0 875 61.6
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 2.0e-284 983.4 886 61.1
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.6e-281 973.8 875 60.5
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 1.6e-281 973.8 887 61.0
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 7.8e-281 971.5 887 60.9
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.0e-280 971.1 879 61.2
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.7e-280 970.3 887 60.8
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.3e-280 969.9 887 60.8
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.9e-279 966.8 886 60.9
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 2.3e-269 933.3 885 60.3
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 3.4e-268 929.5 886 59.0
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 9.9e-268 927.9 904 59.4
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 5.1e-264 915.6 882 58.4
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 2.5e-263 913.3 880 58.8
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 2.5e-263 913.3 886 58.8
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 4.0e-261 906.0 887 58.5
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 6.8e-261 905.2 893 58.7
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 2.6e-260 903.3 893 56.8
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 5.8e-260 902.1 843 59.8
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 2.7e-257 893.3 961 53.2
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 1.0e-256 891.3 882 57.0
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 1.9e-255 887.1 883 57.0
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 8.1e-254 881.7 893 56.8
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 8.1e-254 881.7 893 56.8
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 1.4e-253 880.9 877 57.0
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 1.8e-253 880.6 890 57.5
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 3.4e-252 876.3 887 56.0
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 2.2e-251 873.6 888 58.0
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.6e-246 857.4 884 56.1
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 4.8e-246 855.9 884 53.7
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 8.4e-243 845.1 884 56.3
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 7.9e-241 838.6 883 54.5
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 1.6e-238 830.9 851 56.6
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.2e-236 824.7 884 53.4
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 1.3e-235 821.2 893 54.9
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 1.3e-235 821.2 883 52.0
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 1.7e-235 820.8 886 54.7
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 8.4e-235 818.5 884 52.0
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 7.1e-234 815.5 882 55.7
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.6e-233 812.8 888 53.4
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 1.8e-232 810.8 889 54.4
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 9.6e-231 805.1 861 55.2
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 9.6e-231 805.1 888 52.4
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.6e-230 804.3 882 51.5
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 2.9e-227 793.5 890 53.6
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 1.4e-226 791.2 888 53.6
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 9.7e-223 778.5 883 51.5
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 2.4e-221 773.9 890 52.9
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 2.9e-219 766.9 888 52.0
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 1.4e-218 764.6 911 50.4
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 4.3e-215 753.1 863 52.6
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 1.2e-209 734.9 893 49.9
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 3.9e-208 729.9 887 50.3
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.5e-207 728.0 890 51.1
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 4.4e-207 726.5 890 51.0
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 8.2e-206 722.2 631 63.9
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 1.7e-203 714.5 872 49.3
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 4.7e-201 706.4 942 44.9
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 7.5e-199 699.1 938 44.5
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 3.7e-198 696.8 954 45.2
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 4.8e-198 696.4 893 50.2
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 1.8e-197 694.5 889 50.4
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 1.2e-196 691.8 919 47.7
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 1.0e-195 688.7 776 52.3
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 1.3e-195 688.3 922 47.3
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 7.2e-194 682.6 890 49.6
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 3.6e-193 680.2 888 45.6
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 5.7e-191 672.9 681 56.2
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 2.7e-188 664.1 892 45.9
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 2.6e-183 647.5 888 44.8
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 5.7e-183 646.4 849 46.4
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.3e-182 645.2 959 43.4
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 1.7e-182 644.8 823 47.8
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 1.1e-181 642.1 873 46.3
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 7.0e-181 639.4 879 44.9
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 9.8e-175 619.0 891 43.2
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 3.7e-174 617.1 887 45.8
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 3.2e-173 614.0 835 44.2
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.6e-172 610.1 834 44.7
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.3e-171 608.6 710 50.1
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 4.7e-169 600.1 895 44.2
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.8e-168 598.2 892 44.4
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.2e-167 595.5 681 50.8
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 3.4e-167 594.0 885 43.5
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 1.2e-164 585.5 885 43.3
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 3.9e-155 553.9 902 41.7
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 9.5e-154 549.3 885 42.5
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 2.1e-153 548.1 906 42.1
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 1.3e-150 538.9 887 41.1
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 2.9e-150 537.7 883 42.1
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 2.9e-150 537.7 883 42.1
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 4.9e-150 537.0 878 42.3
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 5.4e-149 533.5 887 41.5
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 7.1e-149 533.1 886 41.4
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 2.1e-148 531.6 890 41.6
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 3.9e-147 527.3 887 42.4
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 5.1e-147 526.9 880 42.0
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 5.1e-147 526.9 880 42.0
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 1.1e-138 499.2 624 48.6
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 4.8e-137 493.8 858 39.6
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 1.1e-136 492.7 887 38.8
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 8.7e-131 473.0 845 38.5
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 1.2e-119 436.0 880 37.8
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 1.9e-114 418.7 919 38.1
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 2.2e-110 405.2 915 37.5
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 1.7e-102 379.0 878 34.5
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.9e-101 375.6 908 33.8
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.8e-91 342.4 897 32.7
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 3.5e-87 328.2 524 44.1
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 1.7e-86 325.9 909 31.6
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 1.8e-67 262.7 454 35.9
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 8.6e-54 217.2 618 32.4
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 1.5e-53 216.5 237 55.7
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.7e-46 193.0 184 58.2
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 9.5e-45 187.2 212 51.9
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 3.6e-44 185.3 858 28.0
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 1.1e-43 183.7 345 38.0
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.5e-42 179.9 381 34.4
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.1e-35 157.1 357 34.2
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 5.2e-35 154.8 220 40.9
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 8.4e-33 147.5 202 49.0
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 2.5e-29 136.0 612 26.6
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 2.7e-23 115.9 526 26.0
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 1.8e-19 103.2 1145 22.1
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 2.2e-17 96.3 141 45.4
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 1.5e-13 83.6 697 22.7
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 1.9e-13 83.2 153 37.3
Gohir.A01G219300 Gossypium hirsutum HOM05D002036 ORTHO05D001913 3.3e-13 82.4 908 23.7
ATR0759G019 Amborella trichopoda HOM05D002769 ORTHO05D001913 4.8e-12 78.6 260 30.4
Gorai.002G253500 Gossypium raimondii HOM05D002036 ORTHO05D001913 1.1e-11 77.4 901 23.6
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 5.3e-11 75.1 153 35.9
SEGI_39803 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 1.2e-10 73.9 495 23.4
Gohir.D01G208400 Gossypium hirsutum HOM05D002036 ORTHO05D001913 1.5e-10 73.6 890 23.5
HPP92_006594 Vanilla planifolia HOM05D002036 ORTHO05D001913 1.1e-08 67.4 288 25.7
Cc06_g03130 Coffea canephora HOM05D002036 ORTHO05D001913 1.9e-08 66.6 280 28.6
Nn1g03080 Nelumbo nucifera HOM05D002769 ORTHO05D003160 2.4e-08 66.2 631 23.1
FAN05G4012 Fragaria x ananassa HOM05D002036 ORTHO05D001913 4.2e-08 65.5 248 27.8
ATR0559G060 Amborella trichopoda HOM05D002515 ORTHO05D002722 5.5e-08 65.1 253 28.1
FAN09G1592 Fragaria x ananassa HOM05D002036 ORTHO05D001913 7.1e-08 64.7 248 28.2
TAR636G3291 Trochodendron aralioides HOM05D002769 ORTHO05D003160 9.3e-08 64.3 834 21.1
MBI07_g08924_MAGBIO Magnolia biondii HOM05D002769 ORTHO05D003160 2.1e-07 63.2 643 23.5
Sed0000481 Sechium edule HOM05D002036 ORTHO05D001913 2.1e-07 63.2 257 25.3
FAN14G3656 Fragaria x ananassa HOM05D002036 ORTHO05D001913 2.7e-07 62.8 248 27.0
PGR004G2455 Punica granatum HOM05D002036 ORTHO05D001913 4.6e-07 62.0 251 25.9
HPP92_019812 Vanilla planifolia HOM05D002036 ORTHO05D001913 6.0e-07 61.6 246 25.6
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 1.0e-06 60.8 109 38.5
Nn3g19851 Nelumbo nucifera HOM05D002769 ORTHO05D003160 1.3e-06 60.5 581 22.7
Rhsim13G0041700 Rhododendron simsii HOM05D002769 ORTHO05D003160 1.3e-06 60.5 650 22.9
PSO764G0032 Papaver somniferum HOM05D002769 ORTHO05D003160 1.8e-06 60.1 677 23.2
QL09p043841 Quercus lobata HOM05D002769 ORTHO05D003160 1.8e-06 60.1 830 22.2
Gohir.D04G118200 Gossypium hirsutum HOM05D002036 ORTHO05D001913 2.3e-06 59.7 250 26.8
Sabra16G0088100 Salix brachista HOM05D002036 ORTHO05D001913 2.3e-06 59.7 306 26.5
Lj5g0022058 Lotus japonicus HOM05D002036 ORTHO05D001913 3.9e-06 58.9 620 24.0
Sed0012455 Sechium edule HOM05D002036 ORTHO05D001913 3.9e-06 58.9 264 26.5
unitig_749.g14259 Utricularia gibba HOM05D002036 ORTHO05D001913 3.9e-06 58.9 266 25.9
Duzib138G1260 Durio zibethinus HOM05D002769 ORTHO05D003160 5.1e-06 58.5 657 23.1
Thhalv10016240m.g Eutrema salsugineum HOM05D002036 ORTHO05D001913 5.1e-06 58.5 883 21.7
Nitab4.5_0002330g0010 Nicotiana tabacum HOM05D002769 ORTHO05D003160 5.1e-06 58.5 716 22.1
QL07p046595 Quercus lobata HOM05D002036 ORTHO05D001913 5.1e-06 58.5 248 25.4
PGSC0003DMG400018957 Solanum tuberosum HOM05D002769 ORTHO05D003160 5.1e-06 58.5 659 22.0
Actinidia05291 Actinidia chinensis HOM05D002036 ORTHO05D001913 8.7e-06 57.8 277 26.0


User provided reference genes

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