Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03441 Corylus avellana HOM05D000203 ORTHO05D000135 3.5e-74 281.6 146 100.0
Cfa010511 Carpinus fangiana HOM05D000203 ORTHO05D000135 2.2e-60 235.7 147 87.1
Haze_02883 Corylus avellana HOM05D000025 ORTHO05D000135 2.0e-29 132.9 138 58.0
Cfa010503 Carpinus fangiana HOM05D000203 ORTHO05D000135 6.5e-28 127.9 140 56.4
Cfa011040 Carpinus fangiana HOM05D000203 ORTHO05D000135 1.8e-25 119.8 140 52.9
Cfa010507 Carpinus fangiana HOM05D000203 ORTHO05D000135 6.7e-25 117.9 141 53.9
QL04p048584 Quercus lobata HOM05D000203 ORTHO05D000135 4.4e-24 115.2 129 55.0
QL01p042159 Quercus lobata HOM05D000203 ORTHO05D000135 1.1e-19 100.5 145 50.3
QL08p064241 Quercus lobata HOM05D000203 ORTHO05D000135 1.9e-19 99.8 135 48.1
QL03p032429 Quercus lobata HOM05D000203 ORTHO05D000135 1.8e-17 93.2 145 49.7
CiPaw.13G044800 Carya illinoinensis HOM05D000203 ORTHO05D000135 6.7e-17 91.3 110 52.7
CiPaw.15G084600 Carya illinoinensis HOM05D000203 ORTHO05D000135 4.4e-16 88.6 78 64.1
Hma1.2p1_0661F.1_g197950 Hydrangea macrophylla HOM05D000203 ORTHO05D000135 2.5e-11 72.8 132 40.2
Hma1.2p1_1758F.1_g301160 Hydrangea macrophylla HOM05D000203 ORTHO05D000135 3.2e-11 72.4 132 39.4
Cfa004715 Carpinus fangiana HOM05D000203 ORTHO05D000135 4.2e-11 72.0 139 39.6
Sopen01g049030 Solanum pennellii HOM05D000203 ORTHO05D000135 1.6e-10 70.1 109 37.6
Gohir.A12G001000 Gossypium hirsutum HOM05D000203 ORTHO05D000135 3.6e-10 68.9 132 40.2
Solyc01g106700.3 Solanum lycopersicum HOM05D000203 ORTHO05D000135 4.7e-10 68.6 109 36.7
Cpa.g.sc20.85 Carica papaya HOM05D000203 ORTHO05D000135 1.4e-09 67.0 132 38.6
Nitab4.5_0003151g0030 Nicotiana tabacum HOM05D000203 ORTHO05D000135 1.4e-09 67.0 116 36.2
CiPaw.06G162900 Carya illinoinensis HOM05D000203 ORTHO05D000135 1.8e-09 66.6 143 40.6
CsaV3_3G045410 Cucumis sativus L. HOM05D000203 ORTHO05D000135 4.0e-09 65.5 88 45.5
PGSC0003DMG400005119 Solanum tuberosum HOM05D000203 ORTHO05D000135 4.0e-09 65.5 102 36.3
Thecc.03G043300 Theobroma cacao HOM05D000203 ORTHO05D000135 4.0e-09 65.5 99 41.4
Gohir.A04G128700 Gossypium hirsutum HOM05D000203 ORTHO05D000135 5.2e-09 65.1 137 37.2
RcHm_v2.0_Chr3g0480601 Rosa chinensis HOM05D000203 ORTHO05D000135 5.2e-09 65.1 102 41.2
RcHm_v2.0_Chr4g0445441 Rosa chinensis HOM05D000203 ORTHO05D000135 5.2e-09 65.1 102 41.2
MELO3C003801.2 Cucumis melo HOM05D000203 ORTHO05D000135 8.8e-09 64.3 88 45.5
Haze_10326 Corylus avellana HOM05D000203 ORTHO05D000135 1.5e-08 63.5 131 38.9
Duzib052G0783 Durio zibethinus HOM05D000203 ORTHO05D000135 2.0e-08 63.2 126 37.3
Gohir.A12G030751 Gossypium hirsutum HOM05D000203 ORTHO05D000135 3.3e-08 62.4 74 45.9
Potri.017G039800 Populus trichocarpa HOM05D000203 ORTHO05D000135 4.4e-08 62.0 98 41.8
Potri.017G040600 Populus trichocarpa HOM05D000203 ORTHO05D000135 4.4e-08 62.0 85 45.9
Gohir.D12G041598 Gossypium hirsutum HOM05D000203 ORTHO05D000135 5.7e-08 61.6 74 43.2
Sabra10G0051300 Salix brachista HOM05D000203 ORTHO05D000135 7.5e-08 61.2 103 37.9
Cc08_g09230 Coffea canephora HOM05D000203 ORTHO05D020489 9.7e-08 60.8 74 43.2
Manes.13G057000 Manihot esculenta HOM05D000203 ORTHO05D000135 1.3e-07 60.5 78 43.6
MD02G1221000 Malus domestica HOM05D000203 ORTHO05D000135 1.7e-07 60.1 97 42.3
Prupe.2G120200 Prunus persica HOM05D000203 ORTHO05D000135 1.7e-07 60.1 90 41.1
Ciclev10030327m.g Citrus clementina HOM05D000203 ORTHO05D000135 2.2e-07 59.7 88 44.3
Duzib084G1411 Durio zibethinus HOM05D000203 ORTHO05D000135 2.2e-07 59.7 76 44.7
Potri.017G040700 Populus trichocarpa HOM05D000203 ORTHO05D000135 2.8e-07 59.3 78 46.2
vmacro22262 Vaccinium macrocarpon HOM05D000203 ORTHO05D000135 3.7e-07 58.9 129 35.7
Psat6g212240 Pisum sativum HOM05D000203 ORTHO05D000135 4.8e-07 58.5 77 44.2
Duzib132G1086 Durio zibethinus HOM05D000203 ORTHO05D000135 8.2e-07 57.8 98 42.9
Gohir.D04G173100 Gossypium hirsutum HOM05D000203 ORTHO05D000135 8.2e-07 57.8 137 35.0
Gohir.D04G173180 Gossypium hirsutum HOM05D000203 ORTHO05D000135 8.2e-07 57.8 137 35.0
Migut.N01120 Erythranthe guttata HOM05D000203 ORTHO05D000135 1.1e-06 57.4 147 33.3
Psat4g131680 Pisum sativum HOM05D000203 ORTHO05D000135 1.1e-06 57.4 77 44.2
PGR042G3077 Punica granatum HOM05D000203 ORTHO05D000135 1.1e-06 57.4 137 35.8
Peaxi162Scf00274g00002 Petunia axillaris HOM05D000203 ORTHO05D000135 1.4e-06 57.0 83 36.1
Cc02_g20240 Coffea canephora HOM05D000203 ORTHO05D000135 1.8e-06 56.6 73 42.5
MELO3C020869.2 Cucumis melo HOM05D000261 ORTHO05D002902 1.8e-06 56.6 87 36.8
ECA238G3185 Erigeron canadensis HOM05D000203 ORTHO05D000135 1.8e-06 56.6 97 39.2
Medtr4g127140 Medicago truncatula HOM05D000203 ORTHO05D000135 2.4e-06 56.2 87 34.5
Sed0023327 Sechium edule HOM05D000203 ORTHO05D000135 3.1e-06 55.8 76 42.1
ClCG02G012490 Citrullus lanatus HOM05D000203 ORTHO05D000135 4.1e-06 55.5 88 38.6
Dinv05939 Davidia involucrata HOM05D000203 ORTHO05D000135 4.1e-06 55.5 85 37.6
Gorai.012G163200 Gossypium raimondii HOM05D000203 ORTHO05D000135 4.1e-06 55.5 135 36.3
Lj5g0019244 Lotus japonicus HOM05D000203 ORTHO05D000135 4.1e-06 55.5 79 43.0
Ca_11008_v3 Cicer arietinum L. HOM05D000203 ORTHO05D000135 7.0e-06 54.7 90 38.9
Gorai.N026300 Gossypium raimondii HOM05D000203 ORTHO05D000135 7.0e-06 54.7 137 35.0
CsaV3_2G016620 Cucumis sativus L. HOM05D000203 ORTHO05D000135 9.1e-06 54.3 87 36.8
Dinv04215 Davidia involucrata HOM05D004059 ORTHO05D000135 9.1e-06 54.3 111 32.4
FAN07G0642 Fragaria x ananassa HOM05D000238 ORTHO05D001156 9.1e-06 54.3 129 37.2
Medtr2g105290 Medicago truncatula HOM05D000203 ORTHO05D000135 9.1e-06 54.3 89 37.1


User provided reference genes

Program Settings