Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 8.3e-191 670.2 344 100.0
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 1.8e-145 519.6 261 100.0
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 9.9e-144 513.8 261 98.5
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 3.9e-140 501.9 261 96.2
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 1.9e-139 499.6 260 96.5
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 7.3e-139 497.7 260 95.4
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 8.1e-138 494.2 261 94.3
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.4e-137 493.4 261 94.3
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 1.4e-137 493.4 261 94.3
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 2.4e-137 492.7 262 93.5
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 2.4e-137 492.7 261 93.9
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 3.1e-137 492.3 261 93.1
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 4.0e-137 491.9 261 94.3
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 4.0e-137 491.9 261 93.5
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 4.0e-137 491.9 261 93.9
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 4.0e-137 491.9 261 93.9
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 5.3e-137 491.5 261 93.9
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 9.0e-137 490.7 261 93.1
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 9.0e-137 490.7 261 93.5
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 1.2e-136 490.3 261 93.5
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 1.2e-136 490.3 261 93.5
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.2e-136 490.3 261 93.5
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 1.2e-136 490.3 260 93.1
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 1.2e-136 490.3 261 92.7
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 1.5e-136 490.0 261 92.7
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 2.6e-136 489.2 261 92.3
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.6e-136 489.2 261 93.1
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 3.4e-136 488.8 261 92.3
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 4.5e-136 488.4 261 93.1
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 5.8e-136 488.0 261 92.7
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 7.6e-136 487.6 261 93.1
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 7.6e-136 487.6 261 92.7
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 9.9e-136 487.3 261 92.3
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 1.3e-135 486.9 261 92.3
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 1.3e-135 486.9 260 92.3
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.3e-135 486.9 261 92.7
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 1.7e-135 486.5 261 93.1
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 3.8e-135 485.3 258 93.4
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 3.8e-135 485.3 261 92.3
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 3.8e-135 485.3 261 92.3
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 3.8e-135 485.3 261 93.5
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 4.9e-135 485.0 261 92.0
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 4.9e-135 485.0 261 92.7
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 6.4e-135 484.6 261 91.6
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 8.4e-135 484.2 261 93.1
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 1.1e-134 483.8 261 92.0
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.1e-134 483.8 261 91.6
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.4e-134 483.4 261 91.2
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 1.4e-134 483.4 265 90.9
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.9e-134 483.0 261 92.3
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 2.4e-134 482.6 261 92.0
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 3.2e-134 482.3 271 89.3
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 4.2e-134 481.9 260 91.9
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 7.1e-134 481.1 260 92.3
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 7.1e-134 481.1 261 91.6
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.2e-133 480.3 261 91.6
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.6e-133 479.9 261 92.0
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 2.7e-133 479.2 261 90.0
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 2.7e-133 479.2 259 93.1
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 2.7e-133 479.2 261 91.6
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 2.7e-133 479.2 261 91.6
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 3.5e-133 478.8 261 90.4
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 7.9e-133 477.6 274 87.2
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.8e-132 476.5 261 90.8
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.8e-132 476.5 261 90.8
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 2.3e-132 476.1 261 91.2
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 2.3e-132 476.1 261 90.8
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 2.3e-132 476.1 261 90.8
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 3.9e-132 475.3 261 90.4
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 5.1e-132 474.9 261 89.7
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 5.1e-132 474.9 261 90.4
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 5.1e-132 474.9 261 90.4
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 6.7e-132 474.6 261 90.4
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 8.7e-132 474.2 261 90.0
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 8.7e-132 474.2 261 90.0
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 8.7e-132 474.2 261 90.0
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 1.1e-131 473.8 261 90.4
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.5e-131 473.4 261 90.0
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 1.5e-131 473.4 261 90.4
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.5e-131 473.4 261 90.0
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 1.5e-131 473.4 261 89.7
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.5e-131 473.4 256 91.0
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 1.9e-131 473.0 261 89.7
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.9e-131 473.0 261 90.4
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 3.3e-131 472.2 261 89.7
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 3.3e-131 472.2 261 89.7
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 3.3e-131 472.2 261 90.0
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 5.6e-131 471.5 281 84.7
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 9.6e-131 470.7 277 87.0
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 1.3e-130 470.3 264 89.4
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 2.8e-130 469.2 261 90.0
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 6.2e-130 468.0 285 83.9
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 1.8e-129 466.5 260 89.2
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.4e-129 466.1 261 88.9
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 2.4e-129 466.1 261 87.4
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 3.1e-129 465.7 261 88.5
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 4.0e-129 465.3 261 88.5
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 5.3e-129 464.9 261 89.3
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 5.3e-129 464.9 261 87.0
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 5.3e-129 464.9 261 88.9
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 6.9e-129 464.5 261 89.3
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 9.0e-129 464.2 260 88.5
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 9.0e-129 464.2 260 88.5
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 9.0e-129 464.2 261 87.0
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 9.0e-129 464.2 261 88.1
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 1.5e-128 463.4 261 88.1
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 1.5e-128 463.4 261 88.1
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 2.6e-128 462.6 261 87.7
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 4.5e-128 461.8 261 87.4
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 4.5e-128 461.8 261 88.5
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 5.8e-128 461.5 261 86.2
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 7.6e-128 461.1 273 85.0
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 1.0e-127 460.7 259 88.4
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.0e-127 460.7 240 96.2
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.0e-127 460.7 261 88.1
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 1.0e-127 460.7 261 86.6
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 1.3e-127 460.3 261 85.8
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 1.7e-127 459.9 260 87.7
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 8.4e-127 457.6 261 87.7
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 1.1e-126 457.2 261 88.1
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 5.5e-126 454.9 256 87.1
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 7.1e-126 454.5 261 85.4
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 9.3e-126 454.1 261 84.7
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 2.7e-125 452.6 261 85.8
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-124 450.3 241 93.4
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 1.8e-124 449.9 261 84.3
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 1.8e-124 449.9 261 84.7
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.9e-124 448.7 241 92.9
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 3.3e-123 445.7 261 85.4
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 8.2e-122 441.0 261 84.7
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 2.4e-121 439.5 261 84.3
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 5.3e-121 438.3 277 81.6
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 1.3e-116 423.7 261 81.6
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 1.3e-116 423.7 261 81.6
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 4.3e-115 418.7 261 78.9
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 3.7e-114 415.6 261 82.0
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 2.4e-113 412.9 261 75.5
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 9.0e-113 411.0 261 78.5
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.6e-112 409.5 261 81.2
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.2e-111 406.4 337 66.2
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 3.8e-111 405.6 213 93.4
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 3.2e-110 402.5 266 77.1
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 7.2e-110 401.4 222 90.5
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 2.7e-109 399.4 261 79.7
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 2.5e-107 392.9 254 78.0
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 4.3e-107 392.1 241 80.5
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 8.2e-106 387.9 309 69.6
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 2.4e-105 386.3 201 93.0
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.7e-98 363.6 200 90.5
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 3.7e-98 362.5 195 89.2
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.6e-96 356.3 256 75.8
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 3.3e-91 339.3 260 65.0
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.3e-91 339.3 177 92.7
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 6.3e-82 308.5 161 91.3
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 3.3e-70 269.6 229 59.4
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 1.3e-66 257.7 240 61.7
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 8.9e-60 235.0 143 84.6
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 3.4e-59 233.0 142 83.8
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.3e-58 231.1 135 88.1
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.4e-57 225.7 113 94.7
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 3.5e-48 196.4 98 93.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 6.6e-47 192.2 271 49.1
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 4.0e-44 183.0 109 83.5
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 1.4e-41 174.5 196 53.1
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 1.0e-39 168.3 108 77.8
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 9.6e-38 161.8 92 84.8
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 2.1e-37 160.6 135 63.0
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 4.0e-36 156.4 100 83.0
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 3.4e-35 153.3 195 48.2
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 3.3e-30 136.7 81 84.0
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.6e-29 134.4 92 73.9
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 4.9e-26 122.9 111 64.0
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 1.4e-20 104.8 86 65.1
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 4.6e-16 89.7 81 63.0
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.0e-10 72.0 59 64.4
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 1.3e-10 71.6 56 67.9
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 9.3e-09 65.5 44 77.3
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 3.5e-08 63.5 62 59.7
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 3.5e-08 63.5 35 80.0
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 1.8e-07 61.2 52 65.4
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 2.3e-07 60.8 38 73.7
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 3.9e-07 60.1 34 82.4
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 3.3e-06 57.0 34 79.4


User provided reference genes

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