Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 3.2e-276 954.5 500 100.0
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 8.3e-200 700.7 477 82.4
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 2.4e-122 443.4 517 57.3
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 4.7e-118 429.1 487 57.3
Cfa000528 Carpinus fangiana HOM05D007286 ORTHO05D008955 7.4e-116 421.8 253 92.1
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 1.2e-97 361.3 549 49.2
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 1.5e-95 354.4 546 48.9
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.9e-95 354.0 545 50.1
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 5.5e-95 352.4 552 47.5
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 2.8e-94 350.1 545 49.9
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.8e-93 347.4 545 49.9
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.8e-93 347.4 541 49.0
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 5.4e-90 335.9 537 48.4
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 1.1e-87 328.2 487 49.9
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 4.3e-87 326.2 487 49.7
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 9.5e-87 325.1 521 48.4
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 9.5e-87 325.1 521 48.4
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 8.0e-86 322.0 527 47.2
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 8.3e-83 312.0 529 45.0
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 8.3e-83 312.0 530 47.0
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 8.3e-83 312.0 500 46.8
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 5.4e-82 309.3 510 47.5
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 5.4e-82 309.3 529 46.1
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 2.3e-80 303.9 536 44.4
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 3.9e-80 303.1 485 48.0
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 1.6e-78 297.7 525 45.9
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 1.2e-76 291.6 505 44.8
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.5e-76 291.2 534 42.9
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 1.3e-75 288.1 521 45.5
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 6.4e-75 285.8 503 46.3
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 2.4e-74 283.9 502 45.6
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 6.0e-73 279.3 522 43.3
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 1.7e-72 277.7 531 42.0
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 8.6e-72 275.4 494 43.7
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 8.6e-72 275.4 456 46.7
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 7.3e-71 272.3 495 43.8
arahy.Tifrunner.gnm1.ann1.VD1ICN Arachis hypogaea HOM05D007286 ORTHO05D008955 2.1e-70 270.8 538 43.5
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 8.1e-70 268.9 494 43.7
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 4.0e-69 266.5 477 44.7
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 4.4e-68 263.1 496 44.0
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 1.3e-67 261.5 537 40.8
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 3.7e-67 260.0 506 42.5
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 1.4e-66 258.1 295 54.2
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 7.1e-66 255.8 463 44.7
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 2.7e-65 253.8 499 42.3
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 3.5e-65 253.4 510 41.8
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 1.1e-63 248.4 499 41.7
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 1.2e-62 245.0 530 40.0
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 2.1e-62 244.2 488 42.4
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 6.2e-62 242.7 523 41.7
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 1.1e-61 241.9 498 41.6
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 1.4e-61 241.5 547 38.0
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 1.2e-60 238.4 495 41.6
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 2.6e-60 237.3 500 40.8
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 3.4e-60 236.9 498 40.0
ClCG05G022150 Citrullus lanatus HOM05D007286 ORTHO05D008955 4.4e-60 236.5 530 40.0
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 9.9e-60 235.3 495 41.2
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 3.2e-58 230.3 479 40.7
Sed0010854 Sechium edule HOM05D007286 ORTHO05D008955 1.6e-57 228.0 528 37.7
MELO3C012308.2 Cucumis melo HOM05D007286 ORTHO05D008955 2.1e-57 227.6 543 38.7
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 8.7e-56 222.2 302 48.7
vmacro23447 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 2.0e-52 211.1 421 41.8
vmacro13789 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 5.8e-52 209.5 421 41.6
CsaV3_5G034980 Cucumis sativus L. HOM05D007286 ORTHO05D008955 9.9e-52 208.8 541 37.5
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 1.3e-51 208.4 488 37.1
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 2.2e-51 207.6 533 37.9
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 1.1e-50 205.3 514 37.9
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 4.2e-50 203.4 538 37.7
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 1.6e-49 201.4 538 37.7
Glyma.15G221400 Glycine max HOM05D007286 ORTHO05D008955 1.0e-48 198.7 357 47.6
AUR62041274 Chenopodium quinoa HOM05D007286 ORTHO05D008955 1.3e-48 198.4 513 36.6
AUR62034104 Chenopodium quinoa HOM05D007286 ORTHO05D008955 1.3e-46 191.8 509 36.0
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 1.7e-43 181.4 517 35.2
FAN10G0279 Fragaria x ananassa HOM05D000139 ORTHO05D008955 4.9e-43 179.9 378 44.2
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 5.5e-42 176.4 505 32.7
FvH4_7g05350 Fragaria vesca HOM05D007286 ORTHO05D008955 9.3e-42 175.6 306 46.4
EL10Ac4g08793 Beta vulgaris HOM05D007286 ORTHO05D008955 3.5e-41 173.7 494 35.0
Hund06829 Selenicereus undatus HOM05D007286 ORTHO05D008955 7.9e-41 172.6 505 34.9
Cpa.g.sc54.34 Carica papaya HOM05D007286 ORTHO05D008955 6.7e-40 169.5 205 52.2
FAN03G2081 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.5e-39 168.3 329 43.8
VMungo1127G2168 Vigna mungo HOM05D007286 ORTHO05D008955 3.3e-39 167.2 191 52.9
FAN01G1792 Fragaria x ananassa HOM05D007286 ORTHO05D008955 9.6e-39 165.6 306 45.1
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 1.7e-35 154.8 490 31.8
DCAR_025313 Daucus carota HOM05D007286 ORTHO05D008955 2.9e-35 154.1 488 35.7
SalBow8G2801 Salvia bowleyana HOM05D007286 ORTHO05D008955 6.0e-33 146.4 479 32.2
SGA_v2.0_scaffold143G35713 Striga asiatica HOM05D007286 ORTHO05D008955 1.0e-32 145.6 479 32.2
Migut.B01162 Erythranthe guttata HOM05D007286 ORTHO05D008955 3.9e-32 143.7 500 32.2
VMungo1127G0495 Vigna mungo HOM05D007286 ORTHO05D008955 9.6e-31 139.0 278 45.7
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 4.1e-29 133.7 456 32.2
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 4.5e-28 130.2 119 62.2
Cc07_g21350 Coffea canephora HOM05D007286 ORTHO05D008955 6.5e-27 126.3 127 58.3
HPP92_018000 Vanilla planifolia HOM05D007286 ORTHO05D008955 4.3e-23 113.6 513 31.8
Hma1.2p1_0892F.1_g233190 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.3e-22 112.1 127 52.0
CDE04G1177 Ceratophyllum demersum HOM05D007286 ORTHO05D008955 1.6e-22 111.7 507 30.0
Dinv30991 Davidia involucrata HOM05D007286 ORTHO05D008955 5.3e-21 106.7 281 36.7
Dinv31112 Davidia involucrata HOM05D007286 ORTHO05D008955 5.3e-21 106.7 281 36.7
Cc07_g21330 Coffea canephora HOM05D007286 ORTHO05D008955 1.7e-19 101.7 287 37.6
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 5.0e-19 100.1 500 30.0
Os11g0129800 Oryza sativa ssp. japonica HOM05D007286 ORTHO05D008955 8.5e-19 99.4 89 59.6
Zm00001eb093550 Zea mays HOM05D007286 ORTHO05D008955 3.3e-15 87.4 480 28.1
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 4.1e-13 80.5 155 40.0
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 5.3e-13 80.1 482 28.2
unitig_22.g5338 Utricularia gibba HOM05D007286 ORTHO05D008955 1.2e-12 79.0 89 55.1
HPP92_026688 Vanilla planifolia HOM05D007286 ORTHO05D008955 5.9e-12 76.6 437 30.4
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.0e-11 75.9 494 27.7
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 1.3e-11 75.5 287 26.8
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 1.7e-11 75.1 497 29.0
Aqoxy386s001 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 3.8e-11 73.9 294 32.7
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 5.0e-11 73.6 353 28.3
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 5.0e-11 73.6 516 27.9
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 6.5e-11 73.2 528 25.9
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 6.5e-11 73.2 494 27.3
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 8.5e-11 72.8 513 25.3
vmacro13790 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 1.1e-10 72.4 69 58.0
vmacro23446 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 1.1e-10 72.4 69 58.0
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 1.4e-10 72.0 502 27.9
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 2.5e-10 71.2 493 27.0
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 4.2e-10 70.5 505 25.3
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 1.2e-09 68.9 506 27.1
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 1.6e-09 68.6 226 26.1
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 1.6e-09 68.6 517 25.5
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 2.1e-09 68.2 349 27.2
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 3.6e-09 67.4 497 27.0
Gohir.A11G035500 Gossypium hirsutum HOM05D005518 ORTHO05D001269 3.6e-09 67.4 500 26.6
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 3.6e-09 67.4 498 27.1
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 4.7e-09 67.0 508 27.8
FAN07G2858 Fragaria x ananassa HOM05D006537 ORTHO05D008186 4.7e-09 67.0 67 55.2
Glyma.15G221551 Glycine max HOM05D007286 ORTHO05D008955 4.7e-09 67.0 56 66.1
Gorai.007G042000 Gossypium raimondii HOM05D005518 ORTHO05D001269 7.9e-09 66.2 498 27.5
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 3.0e-08 64.3 503 25.8
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 5.1e-08 63.5 541 25.1
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 6.7e-08 63.2 306 27.1
Gohir.D11G039100 Gossypium hirsutum HOM05D005518 ORTHO05D001269 6.7e-08 63.2 498 26.7
Oeu023474.2 Olea europaea HOM05D005518 ORTHO05D001269 6.7e-08 63.2 172 31.4
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 6.7e-08 63.2 372 25.8
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 4.4e-07 60.5 554 25.1
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 5.7e-07 60.1 517 25.7
CSS0040133 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 7.4e-07 59.7 106 39.6
PSO384G4662 Papaver somniferum HOM05D007286 ORTHO05D008955 7.4e-07 59.7 59 57.6
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 2.2e-06 58.2 92 44.6
Mapoly0040s0042 Marchantia polymorpha HOM05D024742 ORTHO05D030099 2.2e-06 58.2 486 25.9
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 3.7e-06 57.4 537 24.0
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 3.7e-06 57.4 82 42.7
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 4.8e-06 57.0 515 24.5
Aqoxy386s002 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 6.3e-06 56.6 71 47.9
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 6.3e-06 56.6 525 26.5
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 8.2e-06 56.2 497 26.6


User provided reference genes

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