Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03392 Corylus avellana HOM05D006998 ORTHO05D008733 1.2e-121 439.9 218 100.0
Haze_03396 Corylus avellana HOM05D006998 ORTHO05D008733 3.4e-121 438.3 218 99.5
Cfa010438 Carpinus fangiana HOM05D006998 ORTHO05D008733 7.6e-41 171.4 96 92.7
CiPaw.13G047700 Carya illinoinensis HOM05D006998 ORTHO05D008733 3.9e-37 159.1 87 90.8
QL02p001451 Quercus lobata HOM05D006998 ORTHO05D008733 2.2e-35 153.3 87 88.5
Potri.001G336600 Populus trichocarpa HOM05D006998 ORTHO05D008733 5.9e-33 145.2 87 80.5
Sabra16G0217400 Salix brachista HOM05D006998 ORTHO05D008733 2.9e-32 142.9 87 79.3
Sed0003364 Sechium edule HOM05D006998 ORTHO05D008733 3.8e-32 142.5 87 79.3
Ciclev10017134m.g Citrus clementina HOM05D006998 ORTHO05D008733 3.2e-31 139.4 87 75.9
MELO3C014841.2 Cucumis melo HOM05D006998 ORTHO05D008733 7.2e-31 138.3 87 77.0
Manes.15G155800 Manihot esculenta HOM05D006998 ORTHO05D008733 7.2e-31 138.3 87 77.0
MD09G1018100 Malus domestica HOM05D006998 ORTHO05D008733 2.1e-30 136.7 87 75.9
EL10Ac3g06878 Beta vulgaris HOM05D006998 ORTHO05D008733 2.7e-30 136.3 118 62.7
vmacro18311 Vaccinium macrocarpon HOM05D006998 ORTHO05D008733 2.7e-30 136.3 113 61.9
Actinidia18425 Actinidia chinensis HOM05D006998 ORTHO05D008733 3.6e-30 136.0 87 72.4
RcHm_v2.0_Chr2g0174071 Rosa chinensis HOM05D006998 ORTHO05D008733 3.6e-30 136.0 87 78.2
Atru.chr6.2476 Acer truncatum HOM05D006998 ORTHO05D008733 6.1e-30 135.2 87 74.7
Cpa.g.sc130.46 Carica papaya HOM05D006998 ORTHO05D008733 6.1e-30 135.2 87 75.9
arahy.Tifrunner.gnm1.ann1.W3WD4H Arachis hypogaea HOM05D006998 ORTHO05D008733 6.7e-29 131.7 115 64.3
COL.COLO4_29269 Corchorus olitorius HOM05D006998 ORTHO05D008733 6.7e-29 131.7 87 73.6
FAN02G1980 Fragaria x ananassa HOM05D006998 ORTHO05D008733 6.7e-29 131.7 87 74.7
FAN14G5586 Fragaria x ananassa HOM05D006998 ORTHO05D008733 6.7e-29 131.7 87 74.7
Eucgr.I01699 Eucalyptus grandis HOM05D006998 ORTHO05D008733 8.8e-29 131.3 86 72.1
Ah.13g075640 Amaranthus hybridus HOM05D000240 ORTHO05D001153 1.1e-28 131.0 121 62.0
TAR371G1002 Trochodendron aralioides HOM05D006998 ORTHO05D008733 1.5e-28 130.6 120 56.7
AUR62015328 Chenopodium quinoa HOM05D006998 ORTHO05D008733 2.0e-28 130.2 121 62.0
TWI56G1021 Tripterygium wilfordii HOM05D006998 ORTHO05D008733 2.0e-28 130.2 87 73.6
GSVIVG01003966001 Vitis vinifera HOM05D006998 ORTHO05D008733 3.3e-28 129.4 87 75.9
CANSAT64G0830 Cannabis sativa HOM05D006998 ORTHO05D008733 5.7e-28 128.6 79 78.5
Gohir.A07G225400 Gossypium hirsutum HOM05D006998 ORTHO05D008733 5.7e-28 128.6 87 71.3
COL.COLO4_29265 Corchorus olitorius HOM05D006998 ORTHO05D008733 7.4e-28 128.3 87 72.4
Duzib147G0953 Durio zibethinus HOM05D006998 ORTHO05D008733 7.4e-28 128.3 84 73.8
PGSC0003DMG400012647 Solanum tuberosum HOM05D006998 ORTHO05D008733 9.7e-28 127.9 87 71.3
Gohir.D07G232600 Gossypium hirsutum HOM05D006998 ORTHO05D008733 1.7e-27 127.1 87 70.1
Gorai.001G267900 Gossypium raimondii HOM05D006998 ORTHO05D008733 1.7e-27 127.1 87 70.1
Solyc02g093730.4 Solanum lycopersicum HOM05D006998 ORTHO05D008733 1.7e-27 127.1 87 70.1
SGA_v2.0_scaffold135G34933 Striga asiatica HOM05D006998 ORTHO05D008733 1.7e-27 127.1 81 76.5
PGR142G0400 Punica granatum HOM05D006998 ORTHO05D008733 2.2e-27 126.7 88 69.3
Lj6g0003593 Lotus japonicus HOM05D006998 ORTHO05D008733 2.8e-27 126.3 115 64.3
Lalb_Chr20g0116091 Lupinus albus HOM05D006998 ORTHO05D008733 2.8e-27 126.3 120 59.2
Aqoxy1G01464 Aquilegia oxysepala HOM05D006998 ORTHO05D008733 4.8e-27 125.6 120 53.3
PSO782G5351 Papaver somniferum HOM05D006998 ORTHO05D008733 4.8e-27 125.6 81 75.3
SalBow2G2409 Salvia bowleyana HOM05D006998 ORTHO05D008733 1.1e-26 124.4 84 70.2
VMungo0540G0081 Vigna mungo HOM05D006998 ORTHO05D008733 1.1e-26 124.4 87 73.6
Thecc.04G025300 Theobroma cacao HOM05D006998 ORTHO05D008733 1.4e-26 124.0 84 72.6
arahy.Tifrunner.gnm1.ann1.24IP75 Arachis hypogaea HOM05D006998 ORTHO05D008733 1.8e-26 123.6 82 76.8
MSTRG.3117 Avicennia marina HOM05D006998 ORTHO05D008733 1.8e-26 123.6 114 58.8
Ca_14748_v3 Cicer arietinum L. HOM05D006998 ORTHO05D008733 3.1e-26 122.9 115 60.9
ECA232G0345 Erigeron canadensis HOM05D006998 ORTHO05D008733 3.1e-26 122.9 120 60.0
Medtr3g052740 Medicago truncatula HOM05D006998 ORTHO05D008733 4.1e-26 122.5 120 59.2
Zm00001eb144320 Zea mays HOM05D006998 ORTHO05D008733 4.1e-26 122.5 86 69.8
Psat5g174840 Pisum sativum HOM05D006998 ORTHO05D008733 9.1e-26 121.3 88 71.6
Cc07_g00360 Coffea canephora HOM05D006998 ORTHO05D008733 1.2e-25 120.9 120 56.7
Glyma.08G318800 Glycine max HOM05D006998 ORTHO05D008733 1.2e-25 120.9 120 58.3
TPR.G39742 Trifolium pratense HOM05D006998 ORTHO05D008733 1.2e-25 120.9 115 60.9
MBI06_g05240_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 2.6e-25 119.8 87 67.8
TPR.G33763 Trifolium pratense HOM05D006998 ORTHO05D008733 3.4e-25 119.4 120 58.3
HPP92_007225 Vanilla planifolia HOM05D006998 ORTHO05D008733 3.4e-25 119.4 81 75.3
Thhalv10005152m.g Eutrema salsugineum HOM05D006998 ORTHO05D008733 4.5e-25 119.0 89 71.9
Phvul.006G045900 Phaseolus vulgaris HOM05D006998 ORTHO05D008733 5.9e-25 118.6 115 60.0
THA.LOC104823962 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 5.9e-25 118.6 90 71.1
THA.LOC104823963 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 5.9e-25 118.6 90 71.1
A02p35400 Brassica napus HOM05D006998 ORTHO05D008733 7.7e-25 118.2 90 71.1
Sc03g0007000 Simmondsia chinensis HOM05D006998 ORTHO05D008733 1.0e-24 117.9 122 57.4
AT3G27340 Arabidopsis thaliana HOM05D006998 ORTHO05D008733 1.7e-24 117.1 90 67.8
CARHR148660 Cardamine hirsuta HOM05D006998 ORTHO05D008733 2.2e-24 116.7 90 68.9
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 2.2e-24 116.7 84 66.7
C02p54110 Brassica napus HOM05D006998 ORTHO05D008733 2.9e-24 116.3 90 70.0
BolC2t11473H Brassica oleracea HOM05D006998 ORTHO05D008733 2.9e-24 116.3 90 70.0
Sc03g0006900 Simmondsia chinensis HOM05D006998 ORTHO05D008733 2.9e-24 116.3 120 57.5
BraA02t08541Z Brassica rapa HOM05D006998 ORTHO05D008733 3.8e-24 115.9 90 68.9
Nn5g27086 Nelumbo nucifera HOM05D006998 ORTHO05D008733 3.8e-24 115.9 86 64.0
Carub.0005s0564 Capsella rubella HOM05D006998 ORTHO05D008733 6.5e-24 115.2 91 67.0
HanXRQChr09g0255661 Helianthus annuus HOM05D006998 ORTHO05D008733 6.5e-24 115.2 108 59.3
BcaC06g31012 Brassica carinata HOM05D006998 ORTHO05D008733 1.4e-23 114.0 90 67.8
ATR1089G022 Amborella trichopoda HOM05D006998 ORTHO05D008733 1.9e-23 113.6 81 69.1
Sp2g16530 Schrenkiella parvula HOM05D006998 ORTHO05D008733 2.5e-23 113.2 90 67.8
Lsat_1_v5_gn_4_184841 Lactuca sativa HOM05D006998 ORTHO05D008733 3.2e-23 112.8 115 58.3
Aa31LG2G5380 Aethionema arabicum HOM05D006998 ORTHO05D008733 4.2e-23 112.5 91 67.0
AL5G16660 Arabidopsis lyrata HOM05D006998 ORTHO05D008733 9.4e-23 111.3 90 65.6
CDE04G0536 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 1.2e-22 110.9 88 64.8
A06p41260 Brassica napus HOM05D006998 ORTHO05D008733 1.6e-22 110.5 90 65.6
BraA06t27050Z Brassica rapa HOM05D006998 ORTHO05D008733 1.6e-22 110.5 90 65.6
Os02g0197800 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 1.6e-22 110.5 85 63.5
arahy.Tifrunner.gnm1.ann1.5E1CRJ Arachis hypogaea HOM05D006998 ORTHO05D008733 2.1e-22 110.2 82 69.5
PSO063G6009 Papaver somniferum HOM05D006998 ORTHO05D008733 6.1e-22 108.6 124 51.6
C07p36390 Brassica napus HOM05D006998 ORTHO05D008733 7.9e-22 108.2 90 65.6
BolC7t44158H Brassica oleracea HOM05D006998 ORTHO05D008733 7.9e-22 108.2 91 63.7
CsaV3_3G027380 Cucumis sativus L. HOM05D006998 ORTHO05D008733 6.7e-21 105.1 58 87.9
ClCG05G013170 Citrullus lanatus HOM05D006998 ORTHO05D008733 2.0e-20 103.6 57 87.7
Migut.H00050 Erythranthe guttata HOM05D006998 ORTHO05D008733 2.0e-20 103.6 134 44.8
Hund25052 Selenicereus undatus HOM05D006998 ORTHO05D008733 2.6e-20 103.2 75 65.3
Dinv33390 Davidia involucrata HOM05D006998 ORTHO05D008733 9.7e-20 101.3 67 70.1
MBI06_g43854_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 9.7e-20 101.3 57 82.5
Sed0018714 Sechium edule HOM05D006998 ORTHO05D008733 1.3e-19 100.9 66 72.7
FAN05G2331 Fragaria x ananassa HOM05D006998 ORTHO05D008733 6.3e-19 98.6 57 86.0
CDE07G0016 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 8.2e-19 98.2 67 73.1
Nitab4.5_0000040g0550 Nicotiana tabacum HOM05D006998 ORTHO05D008733 8.2e-19 98.2 58 77.6
Nitab4.5_0005414g0020 Nicotiana tabacum HOM05D006998 ORTHO05D008733 1.8e-18 97.1 57 77.2
Prupe.3G299000 Prunus persica HOM05D000008 ORTHO05D000005 1.8e-18 97.1 66 71.2
SalBow2G0885 Salvia bowleyana HOM05D006998 ORTHO05D008733 3.1e-18 96.3 57 80.7
Peaxi162Scf00080g01715 Petunia axillaris HOM05D006998 ORTHO05D008733 5.3e-18 95.5 58 74.1
SHI03852 Sapria himalayana HOM05D006998 ORTHO05D008733 9.1e-18 94.7 66 68.2
FvH4_6g52430 Fragaria vesca HOM05D006998 ORTHO05D008733 1.2e-17 94.4 66 68.2
CAN.G473.52 Capsicum annuum HOM05D006998 ORTHO05D008733 2.6e-17 93.2 57 77.2
Os01g0904300 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 1.3e-16 90.9 63 68.3
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 2.1e-14 83.6 69 66.7
Medtr1252s0010 Medicago truncatula HOM05D006998 ORTHO05D008733 3.6e-14 82.8 81 53.1
AagrBONN_evm.TU.Sc2ySwM_362.2114 Anthoceros agrestis HOM05D006998 ORTHO05D008733 5.2e-13 79.0 126 42.9
SMO364G0335 Selaginella moellendorffii HOM05D006998 ORTHO05D008733 8.2e-11 71.6 56 58.9
Mapoly0001s0548 Marchantia polymorpha HOM05D006998 ORTHO05D008733 1.3e-08 64.3 60 53.3
CBR_g38954 Chara braunii HOM05D006723 ORTHO05D008194 8.5e-08 61.6 62 48.4
Pp3c11_10230 Physcomitrium patens HOM05D006998 ORTHO05D008733 8.5e-08 61.6 60 50.0


User provided reference genes

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