Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 0.0e+00 1139.0 593 100.0
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 9.4e-235 817.0 593 75.7
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 2.1e-178 629.8 600 60.5
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 8.7e-164 581.3 598 57.9
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 6.3e-146 521.9 605 54.0
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.2e-144 517.7 604 50.5
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.4e-142 510.8 604 49.7
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 4.2e-142 509.2 604 50.2
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 4.4e-139 499.2 605 49.4
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.5e-136 490.7 601 49.3
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.5e-136 490.7 596 49.5
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 6.5e-135 485.3 601 48.4
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.6e-133 480.7 600 48.8
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 4.7e-133 479.2 599 48.4
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 8.0e-133 478.4 596 49.2
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.8e-132 477.2 601 49.1
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 2.3e-132 476.9 596 47.0
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 3.9e-132 476.1 598 48.8
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 2.0e-131 473.8 597 48.6
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 2.0e-131 473.8 601 49.3
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 9.7e-131 471.5 597 48.9
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 2.8e-130 469.9 601 47.1
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 8.2e-130 468.4 601 47.4
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.4e-129 467.6 594 47.8
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.4e-129 467.6 599 47.9
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 4.1e-129 466.1 605 47.1
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 2.0e-128 463.8 601 46.6
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 2.0e-128 463.8 605 46.9
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.6e-128 463.4 598 47.0
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.6e-128 463.4 598 47.0
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.6e-128 463.4 612 46.4
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.0e-127 461.5 601 45.8
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.0e-127 461.5 601 45.8
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.9e-127 459.9 604 46.7
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 5.0e-127 459.1 600 48.5
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 6.5e-127 458.8 606 46.7
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 1.1e-126 458.0 600 47.8
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 4.2e-126 456.1 610 47.2
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 7.2e-126 455.3 601 46.6
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 9.4e-126 454.9 603 47.6
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 2.7e-125 453.4 606 47.4
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.7e-125 452.6 599 44.9
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.7e-125 452.6 601 46.1
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 6.7e-124 448.7 593 46.7
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.2e-123 448.0 596 46.0
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 3.3e-123 446.4 598 46.8
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.3e-122 444.5 603 46.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 2.2e-122 443.7 597 46.1
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.8e-122 442.6 597 44.7
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 8.2e-122 441.8 592 47.1
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 7.0e-121 438.7 600 45.2
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.2e-120 438.0 609 45.6
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.6e-120 437.6 602 46.2
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.7e-119 434.1 595 46.1
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 6.5e-119 432.2 601 45.6
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.2e-118 429.9 609 43.7
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.0e-116 424.9 595 45.5
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 1.5e-115 421.0 593 44.4
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.7e-114 417.5 593 44.2
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.7e-114 417.5 600 43.8
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.2e-114 417.2 593 44.2
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 8.9e-108 395.2 596 43.5
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 2.8e-106 390.2 607 42.2
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 2.8e-106 390.2 607 42.5
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 7.0e-105 385.6 606 41.6
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.6e-104 384.4 604 42.4
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 2.0e-104 384.0 542 43.2
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 5.0e-103 379.4 615 40.2
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.2e-101 374.8 605 42.6
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 8.0e-101 372.1 602 41.2
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.5e-99 367.9 475 46.1
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 4.4e-99 366.3 594 40.2
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 4.4e-99 366.3 371 56.1
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 7.5e-99 365.5 594 40.1
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 2.2e-98 364.0 593 40.5
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.9e-98 363.6 602 40.2
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 8.3e-98 362.1 609 39.4
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 2.4e-97 360.5 608 39.5
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 5.4e-97 359.4 599 40.6
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 5.4e-97 359.4 596 39.8
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 7.0e-97 359.0 378 56.3
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 7.0e-97 359.0 560 42.9
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.2e-96 358.2 607 39.2
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 2.0e-96 357.5 600 40.0
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.7e-95 354.4 606 40.3
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 3.9e-95 353.2 596 38.6
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 5.0e-95 352.8 610 40.3
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 8.6e-95 352.1 610 40.7
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.5e-94 351.3 602 39.2
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.5e-94 351.3 602 38.0
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 4.3e-94 349.7 602 39.0
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 7.3e-94 349.0 598 39.3
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 7.3e-94 349.0 602 38.7
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.2e-93 348.2 596 38.3
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.6e-93 347.8 600 38.8
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 3.6e-93 346.7 600 38.8
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.1e-92 345.1 612 38.9
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 4.0e-92 343.2 600 40.2
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 5.2e-92 342.8 593 38.3
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 8.9e-92 342.0 614 38.4
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.5e-91 341.3 600 38.7
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.0e-91 340.9 600 39.0
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 2.6e-91 340.5 598 39.0
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.4e-91 339.7 600 38.3
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 7.5e-91 339.0 616 38.3
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 7.5e-91 339.0 602 39.7
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.7e-90 337.8 598 38.1
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.7e-90 337.8 607 38.4
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 8.3e-90 335.5 592 39.0
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 9.2e-89 332.0 614 36.5
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.5e-86 324.7 588 37.2
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.9e-86 324.3 596 37.8
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.3e-86 323.6 542 39.3
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.4e-84 318.2 600 36.0
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 5.2e-84 316.2 593 37.4
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 5.2e-84 316.2 603 35.8
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 2.0e-83 314.3 406 44.6
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 4.4e-83 313.2 592 37.2
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 7.5e-83 312.4 590 36.9
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 2.2e-82 310.8 553 38.3
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 2.2e-82 310.8 596 38.3
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.9e-82 310.5 601 36.4
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 3.5e-80 303.5 604 36.3
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 7.8e-80 302.4 592 36.5
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.5e-78 298.1 381 48.6
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 3.6e-77 293.5 435 40.2
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 9.9e-75 285.4 578 36.3
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 4.2e-73 280.0 547 34.2
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 5.4e-73 279.6 373 45.0
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 3.9e-71 273.5 551 35.8
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.5e-70 270.8 572 34.4
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 3.3e-70 270.4 494 36.2
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.6e-69 268.1 498 35.9
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 3.6e-69 266.9 491 36.3
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 4.0e-68 263.5 549 34.1
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 7.6e-67 259.2 501 34.7
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 6.4e-66 256.1 317 47.3
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 6.4e-66 256.1 522 37.7
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 4.6e-64 250.0 604 32.6
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.6e-61 241.5 594 32.8
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 1.1e-60 238.8 477 34.6
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.4e-60 238.4 440 34.8
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 2.4e-57 227.6 345 40.9
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 7.1e-57 226.1 489 32.9
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 1.2e-56 225.3 310 39.4
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.7e-56 224.2 437 32.7
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.6e-56 223.4 437 32.7
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 3.0e-55 220.7 375 37.6
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 8.7e-55 219.2 366 39.3
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 5.6e-54 216.5 344 40.4
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.2e-51 208.8 556 29.1
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.6e-46 189.9 432 29.9
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.4e-44 184.5 270 41.1
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.2e-42 177.9 102 82.4
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 3.8e-42 177.2 127 77.2
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.8e-42 177.2 549 28.2
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.8e-42 177.2 417 28.5
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 4.9e-42 176.8 486 28.8
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 2.5e-41 174.5 369 33.6
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.3e-34 152.1 495 27.3
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 6.5e-34 149.8 77 96.1
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.9e-33 148.3 384 31.5
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 5.5e-33 146.7 331 32.3
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.7e-32 144.4 319 32.3
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.2e-29 134.8 531 26.7
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 4.1e-28 130.6 549 25.1
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 3.8e-26 124.0 105 55.2
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.4e-25 122.1 80 72.5
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.2e-21 108.2 73 74.0
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.1e-20 105.9 265 29.4
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 9.1e-20 102.8 86 60.5
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 1.2e-19 102.4 63 77.8
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 2.9e-18 97.8 369 26.3
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 4.7e-16 90.5 343 25.7
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 9.1e-12 76.3 122 37.7
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.6e-11 74.7 111 39.6
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 2.2e-10 71.6 52 61.5
Cfa014361 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.5e-09 68.9 63 61.9
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 2.7e-08 64.7 102 39.2
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 2.0e-06 58.5 68 51.5


User provided reference genes

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