Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03304 Corylus avellana HOM05D007255 ORTHO05D009052 1.2e-112 409.8 200 100.0
QL09p046138 Quercus lobata HOM05D007255 ORTHO05D009052 4.1e-73 278.5 171 78.9
CiPaw.13G054800 Carya illinoinensis HOM05D007255 ORTHO05D009052 5.3e-73 278.1 170 82.4
Prupe.8G191100 Prunus persica HOM05D007255 ORTHO05D009052 5.9e-72 274.6 170 78.2
MD10G1152600 Malus domestica HOM05D007255 ORTHO05D009052 6.7e-68 261.2 179 73.7
Thecc.01G211700 Theobroma cacao HOM05D007255 ORTHO05D009052 1.7e-66 256.5 170 74.7
arahy.Tifrunner.gnm1.ann1.TV22BE Arachis hypogaea HOM05D007255 ORTHO05D009052 1.8e-65 253.1 171 73.1
Potri.002G250500 Populus trichocarpa HOM05D007255 ORTHO05D009052 5.3e-65 251.5 162 75.3
BraA06t26826Z Brassica rapa HOM05D007255 ORTHO05D009052 7.0e-65 251.1 183 70.5
RcHm_v2.0_Chr6g0282891 Rosa chinensis HOM05D007255 ORTHO05D009052 7.0e-65 251.1 170 75.3
C07p39220 Brassica napus HOM05D007255 ORTHO05D009052 9.1e-65 250.8 183 70.5
BolC7t44442H Brassica oleracea HOM05D007255 ORTHO05D009052 9.1e-65 250.8 183 70.5
A06p39120 Brassica napus HOM05D007255 ORTHO05D009052 1.2e-64 250.4 183 70.5
GSVIVG01006076001 Vitis vinifera HOM05D007255 ORTHO05D009052 1.2e-64 250.4 160 77.5
Atru.chr6.3551 Acer truncatum HOM05D007255 ORTHO05D009052 2.6e-64 249.2 160 75.6
FvH4_2g17870 Fragaria vesca HOM05D007255 ORTHO05D009052 3.5e-64 248.8 170 75.3
FAN15G3515 Fragaria x ananassa HOM05D007255 ORTHO05D009052 3.5e-64 248.8 170 74.7
FAN27G1291 Fragaria x ananassa HOM05D007255 ORTHO05D009052 3.5e-64 248.8 170 74.7
Gorai.007G159200 Gossypium raimondii HOM05D007255 ORTHO05D009052 3.5e-64 248.8 170 71.8
Eucgr.K02090 Eucalyptus grandis HOM05D007255 ORTHO05D009052 4.5e-64 248.4 175 72.6
TPR.G15196 Trifolium pratense HOM05D007255 ORTHO05D009052 4.5e-64 248.4 178 69.1
arahy.Tifrunner.gnm1.ann1.UDT0KZ Arachis hypogaea HOM05D007255 ORTHO05D009052 5.9e-64 248.1 168 73.2
Gohir.A11G142200 Gossypium hirsutum HOM05D007255 ORTHO05D009052 5.9e-64 248.1 169 72.8
COL.COLO4_28926 Corchorus olitorius HOM05D007255 ORTHO05D009052 1.0e-63 247.3 170 72.4
Duzib211G0668 Durio zibethinus HOM05D007255 ORTHO05D009052 1.0e-63 247.3 159 76.1
AL3G18750 Arabidopsis lyrata HOM05D007255 ORTHO05D009052 1.3e-63 246.9 165 75.8
Cpa.g.sc8.78 Carica papaya HOM05D007255 ORTHO05D009052 1.3e-63 246.9 169 72.8
FAN24G0557 Fragaria x ananassa HOM05D007255 ORTHO05D009052 1.7e-63 246.5 170 74.7
TWI18G1029 Tripterygium wilfordii HOM05D007255 ORTHO05D009052 1.7e-63 246.5 165 73.9
Hma1.2p1_0161F.1_g071360 Hydrangea macrophylla HOM05D007255 ORTHO05D009052 2.2e-63 246.1 169 71.6
Gohir.D11G148500 Gossypium hirsutum HOM05D007255 ORTHO05D009052 2.9e-63 245.7 170 71.2
Carub.0003s0699 Capsella rubella HOM05D007255 ORTHO05D009052 3.8e-63 245.4 180 71.7
Lj3g0001968 Lotus japonicus HOM05D007255 ORTHO05D009052 5.0e-63 245.0 170 73.5
Manes.13G054000 Manihot esculenta HOM05D007255 ORTHO05D009052 6.5e-63 244.6 163 74.2
PGR044G0433 Punica granatum HOM05D007255 ORTHO05D009052 6.5e-63 244.6 171 75.4
BcaC06g30785 Brassica carinata HOM05D007255 ORTHO05D009052 8.5e-63 244.2 169 72.8
Dinv10428 Davidia involucrata HOM05D007255 ORTHO05D009052 1.1e-62 243.8 169 69.8
AT3G07440 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 1.5e-62 243.4 165 73.9
Medtr8g011480 Medicago truncatula HOM05D007255 ORTHO05D009052 1.5e-62 243.4 167 72.5
Aa31LG5G18020 Aethionema arabicum HOM05D007255 ORTHO05D009052 1.9e-62 243.0 169 72.2
AT5G48530 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 1.9e-62 243.0 176 70.5
CARHR082090 Cardamine hirsuta HOM05D007255 ORTHO05D009052 2.5e-62 242.7 165 73.9
THA.LOC104818995 Tarenaya hassleriana HOM05D007255 ORTHO05D009052 4.2e-62 241.9 170 71.8
Nitab4.5_0000038g0080 Nicotiana tabacum HOM05D007255 ORTHO05D009052 5.5e-62 241.5 170 70.0
Sp2g18890 Schrenkiella parvula HOM05D007255 ORTHO05D009052 7.2e-62 241.1 176 69.3
Thhalv10004862m.g Eutrema salsugineum HOM05D007255 ORTHO05D009052 9.4e-62 240.7 169 72.2
Nitab4.5_0005972g0030 Nicotiana tabacum HOM05D007255 ORTHO05D009052 1.2e-61 240.4 170 69.4
MSTRG.18490 Avicennia marina HOM05D007255 ORTHO05D009052 1.6e-61 240.0 174 71.3
Sabra02G0190600 Salix brachista HOM05D007255 ORTHO05D009052 1.6e-61 240.0 162 72.2
Actinidia34549 Actinidia chinensis HOM05D007255 ORTHO05D009052 2.1e-61 239.6 170 69.4
Aqoxy5G00040 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 2.1e-61 239.6 170 71.2
SGA_v2.0_scaffold29G12102 Striga asiatica HOM05D007255 ORTHO05D009052 2.1e-61 239.6 173 66.5
CANSAT01G0773 Cannabis sativa HOM05D007255 ORTHO05D009052 1.0e-60 237.3 170 68.2
Oeu064665.2 Olea europaea HOM05D007255 ORTHO05D009052 1.0e-60 237.3 169 68.0
CSS0043687 Camellia sinensis var. sinensis HOM05D007255 ORTHO05D009052 1.8e-60 236.5 161 73.9
Ciclev10016497m.g Citrus clementina HOM05D007255 ORTHO05D009052 1.8e-60 236.5 160 75.0
Ca_23187_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 2.3e-60 236.1 173 69.9
Ca_30803_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 2.3e-60 236.1 173 69.9
Migut.D00726 Erythranthe guttata HOM05D007255 ORTHO05D009052 4.0e-60 235.3 175 69.1
Cc01_g16200 Coffea canephora HOM05D007255 ORTHO05D009052 5.2e-60 235.0 172 70.3
Sc05g0001760 Simmondsia chinensis HOM05D007255 ORTHO05D009052 1.2e-59 233.8 169 68.0
Sopen09g020080 Solanum pennellii HOM05D007255 ORTHO05D009052 5.7e-59 231.5 170 67.1
Lalb_Chr12g0210041 Lupinus albus HOM05D007255 ORTHO05D009052 7.5e-59 231.1 169 69.2
SalBow6G0858 Salvia bowleyana HOM05D007255 ORTHO05D009052 7.5e-59 231.1 177 65.5
Lj1A100G17 Lonicera japonica HOM05D007255 ORTHO05D009052 9.7e-59 230.7 180 67.8
Solyc09g058990.3 Solanum lycopersicum HOM05D007255 ORTHO05D009052 1.3e-58 230.3 170 67.1
Phvul.010G031200 Phaseolus vulgaris HOM05D007255 ORTHO05D009052 3.7e-58 228.8 163 71.8
TAR365G1235 Trochodendron aralioides HOM05D007255 ORTHO05D009052 1.4e-57 226.9 172 68.0
DCAR_018628 Daucus carota HOM05D007255 ORTHO05D009052 1.8e-57 226.5 172 67.4
Rhsim01G0248900 Rhododendron simsii HOM05D007255 ORTHO05D009052 1.8e-57 226.5 176 67.6
Glyma.03G089600 Glycine max HOM05D007255 ORTHO05D009052 3.1e-57 225.7 167 68.9
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 4.1e-57 225.3 169 68.0
Hund02793 Selenicereus undatus HOM05D007255 ORTHO05D009052 5.3e-57 224.9 170 69.4
MELO3C012737.2 Cucumis melo HOM05D007255 ORTHO05D009052 1.6e-56 223.4 166 68.7
Nn1g08274 Nelumbo nucifera HOM05D007255 ORTHO05D009052 3.5e-56 222.2 177 63.8
Lsat_1_v5_gn_5_178401 Lactuca sativa HOM05D007255 ORTHO05D009052 5.9e-56 221.5 192 59.9
Sed0001908 Sechium edule HOM05D007255 ORTHO05D009052 1.7e-55 219.9 167 65.9
CsaV3_7G026920 Cucumis sativus L. HOM05D007255 ORTHO05D009052 2.9e-55 219.2 172 64.5
Ah.11g051090 Amaranthus hybridus HOM05D007255 ORTHO05D009052 1.1e-54 217.2 172 65.7
ECA248G0740 Erigeron canadensis HOM05D007255 ORTHO05D009052 1.1e-54 217.2 134 76.9
ATR0491G001 Amborella trichopoda HOM05D007255 ORTHO05D009052 4.2e-54 215.3 122 82.8
vmacro14695 Vaccinium macrocarpon HOM05D007255 ORTHO05D009052 8.0e-53 211.1 169 63.9
PSO170G5614 Papaver somniferum HOM05D007255 ORTHO05D009052 8.8e-52 207.6 141 68.8
PSO357G0536 Papaver somniferum HOM05D007255 ORTHO05D009052 8.8e-52 207.6 141 68.8
EL10Ac5g10635 Beta vulgaris HOM05D007255 ORTHO05D009052 2.6e-51 206.1 148 69.6
Os02g0478500 Oryza sativa ssp. japonica HOM05D007255 ORTHO05D009052 1.7e-50 203.4 164 64.6
Zm00001eb241080 Zea mays HOM05D007255 ORTHO05D009052 2.8e-50 202.6 160 66.9
unitig_62.g23864 Utricularia gibba HOM05D007255 ORTHO05D009052 8.3e-50 201.1 196 54.1
Nn1g03664 Nelumbo nucifera HOM05D007255 ORTHO05D009052 3.1e-49 199.1 173 59.0
HanXRQChr01g0025051 Helianthus annuus HOM05D007255 ORTHO05D009052 5.4e-49 198.4 126 77.8
unitig_64.g29772 Utricularia gibba HOM05D007255 ORTHO05D009052 5.9e-48 194.9 202 50.0
AUR62028710 Chenopodium quinoa HOM05D007255 ORTHO05D009052 1.3e-47 193.7 186 57.5
Aqoxy2G00044 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 2.0e-43 179.9 134 70.1
Peaxi162Scf00335g01514 Petunia axillaris HOM05D007255 ORTHO05D009052 2.3e-36 156.4 171 51.5
Actinidia23788 Actinidia chinensis HOM05D007255 ORTHO05D009052 8.9e-28 127.9 123 54.5
HPP92_024228 Vanilla planifolia HOM05D007255 ORTHO05D009052 1.5e-27 127.1 106 67.9
Prupe.8G191300 Prunus persica HOM05D007255 ORTHO05D009052 6.4e-26 121.7 93 66.7
VMungo0331G0526 Vigna mungo HOM05D007255 ORTHO05D009052 6.0e-24 115.2 106 62.3
Glyma.16G083400 Glycine max HOM05D007255 ORTHO05D009052 7.8e-24 114.8 61 82.0
HPP92_024260 Vanilla planifolia HOM05D007255 ORTHO05D009052 4.3e-22 109.0 63 76.2
SEGI_09952 Sequoiadendron giganteum HOM05D007255 ORTHO05D009052 3.4e-19 99.4 72 70.8
CDE04G1852 Ceratophyllum demersum HOM05D007255 ORTHO05D009052 5.8e-19 98.6 55 83.6
VMungo0331G1225 Vigna mungo HOM05D007255 ORTHO05D009052 2.9e-18 96.3 63 73.0
AUR62008128 Chenopodium quinoa HOM05D007255 ORTHO05D009052 1.9e-17 93.6 61 73.8
VMungo0251G0654 Vigna mungo HOM05D007255 ORTHO05D009052 1.0e-15 87.8 58 75.9
Psat0s4060g0280 Pisum sativum HOM05D007255 ORTHO05D009052 2.7e-08 63.2 74 51.4
HPP92_024261 Vanilla planifolia HOM05D007255 ORTHO05D431742 1.9e-06 57.0 70 47.1


User provided reference genes

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