Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 6.6e-34 147.1 93 100.0
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 3.5e-19 98.2 61 86.9
Cfa010331 Carpinus fangiana HOM05D007506 ORTHO05D008409 1.5e-17 92.8 50 98.0
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 1.1e-15 86.7 60 78.3
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 3.1e-15 85.1 60 76.7
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 5.2e-15 84.3 59 78.0
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 6.8e-15 84.0 60 78.3
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 8.9e-15 83.6 58 82.8
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 1.5e-14 82.8 69 69.6
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 3.4e-14 81.6 62 74.2
QL04p046828 Quercus lobata HOM05D007506 ORTHO05D008409 9.9e-14 80.1 61 73.8
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 1.7e-13 79.3 60 76.7
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 2.9e-13 78.6 64 65.6
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 3.8e-13 78.2 61 73.8
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 3.8e-13 78.2 61 75.4
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 4.9e-13 77.8 70 61.4
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 1.9e-12 75.9 70 61.4
Sabra10G0188200 Salix brachista HOM05D007506 ORTHO05D008409 4.6e-11 71.2 85 56.5
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 2.3e-10 68.9 61 60.7
TWI38G1985 Tripterygium wilfordii HOM05D007506 ORTHO05D008409 5.1e-10 67.8 54 72.2
FvH4_7g05151 Fragaria vesca HOM05D007506 ORTHO05D008409 6.6e-10 67.4 66 65.2
FAN05G5073 Fragaria x ananassa HOM05D007506 ORTHO05D008409 6.6e-10 67.4 66 65.2
FAN08G2571 Fragaria x ananassa HOM05D007506 ORTHO05D008409 6.6e-10 67.4 66 65.2
FAN28G2052 Fragaria x ananassa HOM05D007506 ORTHO05D008409 6.6e-10 67.4 66 65.2
AL6G14410 Arabidopsis lyrata HOM05D012863 ORTHO05D008409 1.9e-09 65.9 52 67.3
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 1.9e-09 65.9 66 68.2
Glyma.20G110900 Glycine max HOM05D007506 ORTHO05D008409 2.5e-09 65.5 66 63.6
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 2.5e-09 65.5 61 60.7
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 3.3e-09 65.1 64 64.1
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 3.3e-09 65.1 54 70.4
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 3.3e-09 65.1 40 85.0
CANSAT56G4328 Cannabis sativa HOM05D007506 ORTHO05D008409 4.3e-09 64.7 55 63.6
Carub.0006s0364 Capsella rubella HOM05D012863 ORTHO05D008409 7.3e-09 63.9 61 57.4
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 7.3e-09 63.9 66 65.2
PSO801G0534 Papaver somniferum HOM05D007506 ORTHO05D008409 7.3e-09 63.9 67 58.2
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 1.3e-08 63.2 65 63.1
Medtr1g111840 Medicago truncatula HOM05D007506 ORTHO05D008409 1.3e-08 63.2 66 63.6
MBI17_g08330_MAGBIO Magnolia biondii HOM05D007506 ORTHO05D008409 1.6e-08 62.8 60 61.7
PSO339G4482 Papaver somniferum HOM05D007506 ORTHO05D008409 1.6e-08 62.8 67 58.2
Phvul.007G023500 Phaseolus vulgaris HOM05D007506 ORTHO05D008409 1.6e-08 62.8 65 64.6
Ca_25653_v3 Cicer arietinum L. HOM05D007506 ORTHO05D008409 2.8e-08 62.0 66 62.1
ClCG08G008330 Citrullus lanatus HOM05D007506 ORTHO05D008409 2.8e-08 62.0 55 65.5
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 2.8e-08 62.0 64 65.6
Sp6g38070 Schrenkiella parvula HOM05D012863 ORTHO05D008409 3.6e-08 61.6 61 54.1
VMungo0720G0153 Vigna mungo HOM05D007506 ORTHO05D008409 3.6e-08 61.6 66 65.2
MELO3C019903.2 Cucumis melo HOM05D007506 ORTHO05D008409 4.8e-08 61.2 55 65.5
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 1.1e-07 60.1 57 64.9
Hma1.2p1_0756F.1_g213210 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 1.1e-07 60.1 60 63.3
Hma1.2p1_0756F.1_g213215 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 1.1e-07 60.1 60 63.3
Hma1.2p1_1491F.1_g286710 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 1.1e-07 60.1 60 63.3
SEGI_39886 Sequoiadendron giganteum HOM05D007506 ORTHO05D008409 1.4e-07 59.7 45 68.9
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 1.8e-07 59.3 48 68.8
Lalb_Chr06g0166331 Lupinus albus HOM05D007506 ORTHO05D008409 1.8e-07 59.3 70 65.7
MD07G1070900 Malus domestica HOM05D007506 ORTHO05D008409 1.8e-07 59.3 47 68.1
CiPaw.13G041100 Carya illinoinensis HOM05D007506 ORTHO05D008409 2.4e-07 58.9 37 78.4
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 2.4e-07 58.9 65 61.5
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 2.4e-07 58.9 70 57.1
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 2.4e-07 58.9 70 55.7
Lalb_Chr02g0146201 Lupinus albus HOM05D007506 ORTHO05D008409 3.1e-07 58.5 66 59.1
Peaxi162Scf00519g00621 Petunia axillaris HOM05D007506 ORTHO05D008409 3.1e-07 58.5 57 64.9
CDE12G0642 Ceratophyllum demersum HOM05D007506 ORTHO05D008409 4.0e-07 58.2 61 54.1
CsaV3_6G004310 Cucumis sativus L. HOM05D007506 ORTHO05D008409 4.0e-07 58.2 55 63.6
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 4.0e-07 58.2 52 59.6
Zm00001eb242800 Zea mays HOM05D007506 ORTHO05D008409 4.0e-07 58.2 54 64.8
Sc20g0001140 Simmondsia chinensis HOM05D007506 ORTHO05D008409 5.3e-07 57.8 58 60.3
FAN01G2227 Fragaria x ananassa HOM05D002241 ORTHO05D002458 6.9e-07 57.4 73 53.4
A03p01810 Brassica napus HOM05D012863 ORTHO05D008409 1.2e-06 56.6 44 59.1
C03p02190 Brassica napus HOM05D012863 ORTHO05D008409 1.2e-06 56.6 44 59.1
BolC3t12770H Brassica oleracea HOM05D012863 ORTHO05D008409 1.2e-06 56.6 44 59.1
BraA03t09553Z Brassica rapa HOM05D012863 ORTHO05D008409 1.2e-06 56.6 44 59.1
Nitab4.5_0010633g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.5e-06 56.2 63 57.1
TPR.G2499 Trifolium pratense HOM05D007506 ORTHO05D008409 1.5e-06 56.2 62 59.7
Psat6g238400 Pisum sativum HOM05D007506 ORTHO05D008409 2.0e-06 55.8 58 63.8
Sed0023104 Sechium edule HOM05D007506 ORTHO05D008409 2.0e-06 55.8 56 62.5
FAN03G1835 Fragaria x ananassa HOM05D007506 ORTHO05D008409 2.6e-06 55.5 66 59.1
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 3.4e-06 55.1 63 57.1
arahy.Tifrunner.gnm1.ann1.DEP6R1 Arachis hypogaea HOM05D007506 ORTHO05D008409 4.4e-06 54.7 58 65.5
arahy.Tifrunner.gnm1.ann1.MBF964 Arachis hypogaea HOM05D007506 ORTHO05D008409 4.4e-06 54.7 58 65.5
Dinv02210 Davidia involucrata HOM05D007506 ORTHO05D008409 4.4e-06 54.7 57 63.2
HanXRQChr12g0368271 Helianthus annuus HOM05D021830 ORTHO05D008409 4.4e-06 54.7 58 60.3
Zm00001eb252110 Zea mays HOM05D000188 ORTHO05D003976 4.4e-06 54.7 67 52.2
Nitab4.5_0005214g0030 Nicotiana tabacum HOM05D007506 ORTHO05D008409 5.8e-06 54.3 63 57.1
Solyc11g006750.1 Solanum lycopersicum HOM05D007506 ORTHO05D008409 5.8e-06 54.3 59 61.0
Sopen11g002680 Solanum pennellii HOM05D007506 ORTHO05D008409 9.9e-06 53.5 59 61.0


User provided reference genes

Program Settings