Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 4.7e-151 537.7 253 100.0
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 3.3e-104 382.1 253 75.9
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 6.9e-102 374.4 252 73.4
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.3e-100 370.2 253 73.1
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 1.6e-98 363.2 253 71.5
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.3e-95 353.6 253 70.4
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 3.7e-95 352.1 250 70.8
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 1.8e-94 349.7 248 71.4
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 1.8e-94 349.7 253 70.0
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 1.2e-93 347.1 253 68.8
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 1.2e-93 347.1 253 69.6
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 2.0e-93 346.3 254 70.1
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 2.6e-93 345.9 253 70.4
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 2.6e-93 345.9 253 68.8
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 3.4e-93 345.5 253 68.4
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 7.6e-93 344.4 253 68.4
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 1.3e-92 343.6 251 69.3
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.7e-92 343.2 253 69.2
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 2.9e-92 342.4 251 69.3
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 2.9e-92 342.4 253 66.8
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 5.0e-92 341.7 253 66.8
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 5.0e-92 341.7 253 67.2
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 6.5e-92 341.3 253 68.0
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 2.5e-91 339.3 253 68.0
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 3.2e-91 339.0 249 68.7
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 3.2e-91 339.0 253 69.2
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 5.5e-91 338.2 253 66.4
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 5.5e-91 338.2 253 67.6
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 9.3e-91 337.4 253 67.2
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 1.6e-90 336.7 253 67.6
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 2.1e-90 336.3 253 66.8
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 3.6e-90 335.5 238 71.8
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 3.6e-90 335.5 253 66.8
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 4.6e-90 335.1 251 67.3
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 6.1e-90 334.7 253 66.0
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 6.1e-90 334.7 248 67.3
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 1.3e-89 333.6 253 66.8
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 1.3e-89 333.6 253 68.4
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 3.9e-89 332.0 244 68.0
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 5.1e-89 331.6 248 66.9
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 6.7e-89 331.3 249 66.7
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 6.7e-89 331.3 248 67.3
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 8.7e-89 330.9 253 66.8
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 1.1e-88 330.5 253 65.6
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 1.5e-88 330.1 274 63.5
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 3.3e-88 328.9 253 66.4
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 3.3e-88 328.9 253 67.2
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 4.3e-88 328.6 249 66.7
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 4.3e-88 328.6 249 66.3
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 9.7e-88 327.4 253 64.0
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 1.3e-87 327.0 253 66.8
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 1.3e-87 327.0 248 66.1
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.6e-87 326.6 250 64.0
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 1.6e-87 326.6 253 66.8
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.6e-87 326.6 248 65.7
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 2.8e-87 325.9 251 66.5
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 2.8e-87 325.9 249 66.3
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 3.7e-87 325.5 249 66.3
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 3.7e-87 325.5 249 66.3
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 4.8e-87 325.1 253 65.6
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 8.2e-87 324.3 253 65.2
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 8.2e-87 324.3 249 66.3
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 1.1e-86 323.9 248 65.3
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.4e-86 323.6 250 63.2
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.8e-86 323.2 253 64.8
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 1.8e-86 323.2 249 65.9
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 1.8e-86 323.2 253 64.8
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 2.4e-86 322.8 248 65.7
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 2.4e-86 322.8 248 66.1
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 6.9e-86 321.2 253 64.4
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 1.2e-85 320.5 253 62.8
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.0e-85 319.7 253 64.0
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 2.0e-85 319.7 249 64.7
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 2.0e-85 319.7 249 63.5
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.6e-85 319.3 253 64.0
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 3.4e-85 318.9 248 63.3
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 4.5e-85 318.5 248 62.5
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 7.7e-85 317.8 248 64.5
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 2.2e-84 316.2 233 68.2
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 2.9e-84 315.8 247 63.6
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 2.9e-84 315.8 248 65.7
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 5.0e-84 315.1 249 61.0
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 8.5e-84 314.3 248 64.1
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 8.5e-84 314.3 248 63.7
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 1.1e-83 313.9 244 64.3
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 1.9e-83 313.2 248 63.7
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 2.5e-83 312.8 246 62.6
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 4.2e-83 312.0 253 63.6
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 7.2e-83 311.2 246 62.6
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 1.2e-82 310.5 248 62.9
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 1.2e-82 310.5 246 61.8
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 1.2e-82 310.5 253 63.2
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 1.6e-82 310.1 250 61.6
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 1.6e-82 310.1 248 62.9
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 1.6e-82 310.1 248 62.9
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 1.6e-82 310.1 248 62.9
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 1.6e-82 310.1 273 59.7
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 2.7e-82 309.3 250 61.6
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 3.6e-82 308.9 250 61.6
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 4.6e-82 308.5 250 61.6
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 6.1e-82 308.1 246 61.4
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 7.9e-82 307.8 245 61.6
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 1.0e-81 307.4 251 62.2
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 1.8e-81 306.6 319 53.0
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 8.8e-81 304.3 257 59.5
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 1.1e-80 303.9 253 61.3
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 3.3e-80 302.4 248 62.1
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 9.7e-80 300.8 249 60.6
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 2.8e-79 299.3 249 59.8
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 1.4e-78 297.0 249 60.2
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 4.5e-77 292.0 242 59.1
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.5e-75 286.2 255 58.8
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 4.2e-75 285.4 252 59.5
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 7.2e-75 284.6 242 58.3
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 2.7e-74 282.7 242 57.9
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 6.7e-73 278.1 241 56.4
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 8.8e-73 277.7 218 67.0
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 3.3e-72 275.8 206 67.5
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 2.2e-71 273.1 213 67.1
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 4.8e-71 271.9 440 41.1
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 3.6e-58 229.2 244 51.6
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 2.3e-57 226.5 185 62.7
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 5.7e-56 221.9 185 61.6
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 1.3e-55 220.7 217 53.9
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 1.1e-54 217.6 185 58.4
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 3.7e-47 192.6 131 71.8
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 3.0e-41 172.9 181 50.8
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 2.2e-39 166.8 141 61.7
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 2.4e-38 163.3 149 59.1
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 1.2e-37 161.0 229 39.7
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.2e-37 161.0 98 77.6
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 6.6e-36 155.2 240 38.8
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 3.1e-33 146.4 75 86.7
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 8.9e-33 144.8 100 70.0
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 2.6e-32 143.3 241 35.7
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 4.9e-31 139.0 73 83.6
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 6.2e-26 122.1 100 64.0
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 1.8e-25 120.6 183 40.4
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 1.4e-22 110.9 69 73.9
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 3.2e-22 109.8 74 68.9
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 5.1e-20 102.4 66 74.2
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 8.6e-20 101.7 59 78.0
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.5e-19 100.1 61 80.3
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 8.1e-10 68.6 59 64.4
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 1.4e-09 67.8 35 82.9
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 1.4e-09 67.8 38 81.6
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 2.0e-08 63.9 32 87.5
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 2.0e-08 63.9 35 74.3


User provided reference genes

Program Settings