Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 1.8e-246 855.5 443 100.0
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 7.9e-194 680.6 404 88.9
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 2.7e-186 655.6 410 83.2
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.4e-168 594.3 396 78.3
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 1.7e-167 593.2 402 73.4
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 4.8e-167 591.7 396 77.5
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.1e-166 590.5 402 75.4
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.4e-166 590.1 412 73.1
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 3.1e-166 589.0 396 77.5
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 5.3e-166 588.2 401 76.1
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 9.1e-166 587.4 403 74.2
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 7.7e-165 584.3 404 72.5
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.7e-164 583.2 399 75.2
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.1e-163 580.5 401 75.1
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.6e-162 576.6 394 75.9
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 4.7e-162 575.1 401 73.1
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 8.0e-162 574.3 407 72.0
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 1.0e-161 573.9 397 73.6
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.4e-161 573.5 408 72.3
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 8.8e-161 570.9 435 70.1
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 8.8e-161 570.9 440 69.5
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 2.6e-160 569.3 409 71.4
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 3.3e-160 568.9 400 72.5
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 5.7e-160 568.2 446 67.3
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 7.4e-160 567.8 399 72.7
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 2.2e-159 566.2 417 70.7
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.8e-159 565.1 396 72.2
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.1e-158 563.9 402 72.6
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 1.1e-158 563.9 391 73.1
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.4e-158 563.5 405 72.1
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 4.1e-158 562.0 396 71.5
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 9.1e-158 560.8 403 72.2
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.2e-157 560.5 402 72.6
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 1.2e-157 560.5 407 71.7
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 2.0e-157 559.7 400 70.8
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 3.5e-157 558.9 403 71.2
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.5e-157 558.9 396 71.7
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 4.5e-157 558.5 401 71.8
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 4.5e-157 558.5 401 71.8
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 4.5e-157 558.5 403 72.2
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 1.3e-156 557.0 413 68.3
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 2.9e-156 555.8 404 69.8
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 6.5e-156 554.7 405 70.1
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 6.5e-156 554.7 405 70.1
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 1.5e-155 553.5 406 69.0
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.5e-155 553.5 404 70.8
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.9e-155 553.1 406 68.7
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.9e-155 553.1 445 65.6
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 3.2e-155 552.4 406 68.7
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 3.2e-155 552.4 406 68.7
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 4.2e-155 552.0 404 67.8
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 4.2e-155 552.0 406 68.5
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 4.2e-155 552.0 406 68.5
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 5.5e-155 551.6 403 70.5
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 9.4e-155 550.8 403 70.0
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.2e-154 550.4 403 70.0
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.2e-154 550.4 407 70.0
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.7e-154 549.3 396 69.7
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 3.6e-154 548.9 403 69.5
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 6.1e-154 548.1 407 68.8
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 6.1e-154 548.1 402 71.1
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 8.0e-154 547.7 401 69.1
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 2.3e-153 546.2 401 68.6
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 8.8e-153 544.3 402 70.4
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.5e-152 543.5 407 68.1
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.5e-152 543.5 402 68.9
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 2.0e-152 543.1 395 68.9
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 2.6e-152 542.7 396 68.7
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 2.6e-152 542.7 396 68.7
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 4.4e-152 542.0 397 68.5
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.2e-151 539.7 395 68.9
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 2.2e-151 539.7 395 68.9
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.7e-151 538.9 403 67.7
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 3.7e-151 538.9 400 68.8
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-150 537.0 397 67.8
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.4e-150 537.0 397 67.8
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 1.4e-150 537.0 394 69.5
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.8e-150 536.6 396 68.7
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 4.1e-150 535.4 396 68.4
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 4.1e-150 535.4 396 68.9
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 1.2e-149 533.9 396 68.2
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.6e-149 533.5 395 67.8
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 2.7e-149 532.7 397 67.8
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 2.7e-149 532.7 407 67.3
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 4.5e-149 531.9 388 68.6
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 5.9e-149 531.6 396 68.7
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.3e-148 530.4 418 65.1
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.3e-148 530.4 405 66.9
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.3e-148 530.4 418 65.6
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 2.2e-148 529.6 405 67.9
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 5.0e-148 528.5 411 66.4
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.1e-147 527.3 432 64.4
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 2.5e-147 526.2 410 65.9
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.2e-147 525.8 344 79.7
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 7.2e-147 524.6 396 65.2
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.6e-146 523.5 404 66.6
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.0e-145 520.8 363 74.1
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 2.3e-145 519.6 386 68.1
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 7.5e-144 514.6 409 65.8
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 9.8e-144 514.2 408 64.7
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.4e-142 510.4 420 65.7
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 3.1e-142 509.2 394 66.0
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 4.5e-141 505.4 419 63.2
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 5.9e-141 505.0 388 66.2
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 3.8e-140 502.3 403 65.0
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.8e-137 493.4 394 64.7
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 9.8e-136 487.6 501 53.3
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.2e-135 486.5 402 62.7
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 3.2e-134 482.6 438 59.8
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.6e-130 470.3 414 60.9
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 4.4e-128 462.2 435 56.3
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.1e-126 457.6 393 61.6
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 3.2e-126 456.1 398 58.0
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.0e-126 454.9 389 59.9
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 1.9e-123 446.8 395 58.2
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 4.7e-122 442.2 397 57.9
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 4.0e-121 439.1 414 61.8
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 6.8e-121 438.3 390 55.6
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 2.0e-120 436.8 286 79.4
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 3.7e-119 432.6 402 55.5
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 3.5e-117 426.0 397 53.7
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 1.4e-113 414.1 396 53.5
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 1.0e-108 397.9 388 51.0
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 1.2e-106 391.0 418 49.5
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 2.8e-106 389.8 406 49.0
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 6.2e-106 388.7 406 48.8
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.1e-102 377.9 404 52.5
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.4e-102 377.5 400 49.5
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.4e-102 376.7 268 73.5
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.7e-100 370.5 393 49.6
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.6e-90 337.4 394 48.5
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 3.6e-90 336.3 261 70.5
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 3.7e-82 309.7 251 62.9
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 2.6e-72 276.9 258 60.5
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 2.6e-72 276.9 188 70.7
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.7e-71 274.2 243 60.1
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.3e-67 260.0 404 40.1
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 8.2e-66 255.4 396 41.2
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 8.2e-58 228.8 129 82.2
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.0e-55 219.5 160 66.9
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 1.8e-49 201.1 122 83.6
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 6.3e-42 176.0 158 62.7
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 2.9e-39 167.2 148 55.4
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.5e-32 143.7 94 74.5
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 5.0e-31 139.8 118 63.6
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 6.8e-28 129.4 121 59.5
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 2.8e-26 124.0 77 76.6
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.1e-25 122.1 129 56.6
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 5.9e-24 116.3 72 79.2
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 5.6e-22 109.8 82 68.3
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 6.8e-20 102.8 99 48.5
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.8e-17 94.7 60 78.3
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 1.2e-16 92.0 58 72.4
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.3e-15 88.6 63 69.8
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 3.3e-14 84.0 75 65.3
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 8.0e-13 79.3 54 68.5
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 6.0e-08 63.2 37 83.8
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.7e-07 61.6 43 69.8


User provided reference genes

Program Settings