Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 4.8e-40 167.5 95 100.0
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 7.2e-36 153.7 95 91.6
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 6.1e-19 97.4 88 63.6
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.3e-18 95.5 93 69.9
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 4.0e-18 94.7 90 64.4
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 6.8e-18 94.0 87 63.2
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 3.4e-17 91.7 92 65.2
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 5.7e-17 90.9 94 61.7
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 7.5e-17 90.5 85 65.9
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 9.8e-17 90.1 92 60.9
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 1.3e-16 89.7 87 65.5
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.2e-16 89.0 84 66.7
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.2e-16 89.0 84 66.7
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 2.8e-16 88.6 93 57.0
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 1.1e-15 86.7 88 58.0
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.8e-15 85.9 80 62.5
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 1.8e-15 85.9 87 54.0
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 2.4e-15 85.5 79 67.1
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 2.4e-15 85.5 74 68.9
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 3.1e-15 85.1 89 55.1
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 3.1e-15 85.1 85 61.2
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 3.1e-15 85.1 75 62.7
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 4.1e-15 84.7 83 68.7
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 5.4e-15 84.3 83 65.1
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 5.4e-15 84.3 74 66.2
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 5.4e-15 84.3 93 61.3
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 7.0e-15 84.0 91 60.4
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 7.0e-15 84.0 84 63.1
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 7.0e-15 84.0 87 62.1
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 7.0e-15 84.0 78 66.7
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 9.1e-15 83.6 90 60.0
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 9.1e-15 83.6 83 65.1
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 9.1e-15 83.6 84 59.5
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 1.2e-14 83.2 70 67.1
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.6e-14 82.8 82 59.8
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.0e-14 82.4 78 66.7
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 2.7e-14 82.0 77 66.2
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 2.7e-14 82.0 77 66.2
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.7e-14 82.0 78 66.7
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 2.7e-14 82.0 78 59.0
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.5e-14 81.6 95 54.7
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 4.5e-14 81.3 90 60.0
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 4.5e-14 81.3 79 64.6
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 5.9e-14 80.9 78 61.5
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 5.9e-14 80.9 77 64.9
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 5.9e-14 80.9 77 64.9
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 5.9e-14 80.9 77 64.9
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 5.9e-14 80.9 93 52.7
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 7.7e-14 80.5 79 63.3
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 7.7e-14 80.5 78 64.1
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.7e-14 80.5 95 54.7
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 7.7e-14 80.5 66 69.7
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 7.7e-14 80.5 75 62.7
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.3e-13 79.7 78 62.8
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.3e-13 79.7 86 58.1
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.3e-13 79.7 73 65.8
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.3e-13 79.7 69 66.7
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 1.7e-13 79.3 82 57.3
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.7e-13 79.3 92 56.5
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 2.9e-13 78.6 79 62.0
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 2.9e-13 78.6 73 63.0
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 3.8e-13 78.2 78 60.3
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 3.8e-13 78.2 78 60.3
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 3.8e-13 78.2 80 58.8
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 3.8e-13 78.2 68 66.2
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 3.8e-13 78.2 74 67.6
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 3.8e-13 78.2 62 69.4
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 5.0e-13 77.8 92 54.3
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 6.5e-13 77.4 68 61.8
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 6.5e-13 77.4 67 67.2
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 6.5e-13 77.4 72 58.3
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 8.6e-13 77.0 86 59.3
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 8.6e-13 77.0 82 54.9
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 1.5e-12 76.3 78 59.0
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 1.5e-12 76.3 91 53.8
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.5e-12 76.3 69 63.8
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.5e-12 76.3 90 53.3
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 1.5e-12 76.3 69 59.4
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 1.5e-12 76.3 60 73.3
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 1.5e-12 76.3 71 67.6
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 1.9e-12 75.9 78 57.7
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 1.9e-12 75.9 67 65.7
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 1.9e-12 75.9 86 57.0
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 1.9e-12 75.9 85 54.1
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 2.5e-12 75.5 81 55.6
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 2.5e-12 75.5 96 54.2
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.5e-12 75.5 83 55.4
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 3.2e-12 75.1 79 59.5
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 3.2e-12 75.1 74 56.8
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.2e-12 75.1 90 52.2
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 3.2e-12 75.1 80 60.0
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.5e-12 74.3 91 53.8
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 5.5e-12 74.3 66 62.1
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 7.2e-12 73.9 84 51.2
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 7.2e-12 73.9 84 51.2
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 9.5e-12 73.6 66 62.1
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 1.6e-11 72.8 78 53.8
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.6e-11 72.8 95 49.5
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.6e-11 72.8 74 62.2
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.1e-11 72.4 88 54.5
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.8e-11 72.0 88 54.5
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 3.6e-11 71.6 67 62.7
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 4.7e-11 71.2 63 63.5
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 4.7e-11 71.2 75 61.3
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 4.7e-11 71.2 78 56.4
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.7e-11 71.2 82 54.9
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 4.7e-11 71.2 74 55.4
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.1e-11 70.9 67 61.2
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.1e-11 70.9 67 61.2
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.1e-11 70.9 74 63.5
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 6.1e-11 70.9 75 54.7
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 6.1e-11 70.9 71 56.3
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 8.0e-11 70.5 81 56.8
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 8.0e-11 70.5 79 54.4
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 8.0e-11 70.5 63 65.1
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 8.0e-11 70.5 66 59.1
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 1.8e-10 69.3 65 61.5
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 2.3e-10 68.9 67 58.2
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 3.0e-10 68.6 83 55.4
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 3.0e-10 68.6 93 50.5
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 4.0e-10 68.2 72 59.7
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 4.0e-10 68.2 70 61.4
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 5.2e-10 67.8 77 55.8
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 6.8e-10 67.4 74 59.5
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 6.8e-10 67.4 66 57.6
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 8.8e-10 67.0 73 63.0
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 1.2e-09 66.6 63 66.7
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.0e-09 65.9 66 56.1
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 4.4e-09 64.7 61 59.0
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 7.5e-09 63.9 70 58.6
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 7.5e-09 63.9 70 58.6
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 1.3e-08 63.2 65 60.0
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.7e-08 62.8 69 56.5
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.7e-08 62.8 77 51.9
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.2e-08 62.4 78 51.3
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 2.2e-08 62.4 65 60.0
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 4.9e-08 61.2 64 54.7
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 6.3e-08 60.8 81 50.6
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.1e-07 60.1 74 56.8
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.4e-07 58.9 81 49.4
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 2.4e-07 58.9 67 50.7
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.1e-07 58.5 78 50.0
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 5.4e-07 57.8 60 63.3
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 1.2e-06 56.6 77 46.8
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 1.2e-06 56.6 76 48.7
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 4.5e-06 54.7 81 45.7
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 4.5e-06 54.7 76 47.4
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 7.8e-06 53.9 61 50.8


User provided reference genes

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