Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 4.3e-256 887.5 446 100.0
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 8.4e-228 793.5 446 89.0
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 1.3e-220 769.6 456 87.3
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 3.8e-212 741.5 430 86.3
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 1.3e-209 733.0 436 84.6
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.6e-207 726.1 459 81.0
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 7.7e-205 717.2 428 82.9
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 1.7e-204 716.1 449 80.6
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 3.8e-204 714.9 449 81.7
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 4.2e-203 711.4 413 85.7
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.6e-202 709.5 434 82.5
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 3.6e-202 708.4 434 82.9
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 4.6e-202 708.0 444 81.8
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 1.0e-201 706.8 445 80.7
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 2.3e-201 705.7 445 79.3
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 1.9e-200 702.6 460 79.1
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 4.3e-200 701.4 428 81.5
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.7e-200 701.0 428 81.3
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.2e-199 699.1 428 80.8
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 3.7e-199 698.4 429 81.4
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 3.7e-199 698.4 445 79.6
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 6.3e-199 697.6 404 86.4
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.8e-198 696.0 423 81.6
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.8e-198 696.0 451 78.9
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 2.4e-198 695.7 457 77.5
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 3.1e-198 695.3 425 81.9
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 9.1e-198 693.7 429 80.4
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 2.0e-197 692.6 429 80.2
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 2.6e-197 692.2 457 77.2
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.3e-196 689.9 457 77.2
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 8.5e-196 687.2 475 75.6
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 1.1e-195 686.8 445 78.9
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 2.5e-195 685.6 456 77.4
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 2.1e-194 682.6 457 76.6
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 3.6e-194 681.8 398 83.4
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 1.0e-193 680.2 398 83.9
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 1.0e-193 680.2 398 83.2
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 1.4e-193 679.9 397 85.1
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.4e-193 679.9 399 84.5
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 2.3e-193 679.1 418 81.8
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 1.1e-192 676.8 398 82.9
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.1e-192 676.8 398 82.9
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 2.0e-192 676.0 404 83.7
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 3.3e-192 675.2 398 83.2
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 4.4e-192 674.9 456 76.5
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 5.7e-192 674.5 389 85.6
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 7.4e-192 674.1 398 82.9
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 7.4e-192 674.1 461 76.8
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 9.7e-192 673.7 384 87.0
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.3e-191 673.3 414 80.7
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.3e-191 673.3 394 84.5
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.7e-191 672.9 404 83.7
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 2.2e-191 672.5 398 82.7
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 2.2e-191 672.5 385 86.8
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 3.7e-191 671.8 399 82.2
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.7e-191 671.8 454 76.4
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 4.8e-191 671.4 398 82.4
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 4.8e-191 671.4 394 84.0
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.1e-190 670.2 416 80.0
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 1.8e-190 669.5 393 84.5
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.4e-190 669.1 414 80.2
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 5.3e-190 667.9 393 84.0
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 7.0e-190 667.5 450 76.2
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.2e-189 666.8 444 76.6
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 1.2e-189 666.8 398 82.2
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 2.0e-189 666.0 441 76.0
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 2.6e-189 665.6 455 75.2
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 3.5e-189 665.2 404 81.2
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 3.5e-189 665.2 402 82.8
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 4.5e-189 664.8 451 74.1
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 4.5e-189 664.8 415 81.0
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 5.9e-189 664.5 385 84.9
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 1.0e-188 663.7 385 85.5
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.0e-188 663.7 393 84.5
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 1.3e-188 663.3 409 79.5
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 1.3e-188 663.3 387 85.8
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 1.3e-188 663.3 454 75.1
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 3.8e-188 661.8 401 80.8
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 6.5e-188 661.0 382 85.1
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 6.5e-188 661.0 393 84.0
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 8.5e-188 660.6 398 81.9
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 8.5e-188 660.6 409 79.2
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 1.1e-187 660.2 398 80.7
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 1.1e-187 660.2 386 83.2
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 1.9e-187 659.4 382 84.3
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.9e-187 659.4 396 82.8
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 1.9e-187 659.4 396 82.8
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.2e-187 658.7 409 80.0
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 7.2e-187 657.5 409 79.2
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 7.2e-187 657.5 382 84.0
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 9.4e-187 657.1 400 82.5
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 9.4e-187 657.1 393 83.7
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 1.2e-186 656.8 408 80.4
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 3.6e-186 655.2 390 83.8
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 4.7e-186 654.8 404 80.4
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 2.3e-185 652.5 402 81.1
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 5.2e-185 651.4 390 84.1
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 1.5e-184 649.8 439 73.6
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 7.4e-184 647.5 524 65.8
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 1.3e-183 646.7 402 79.1
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.2e-181 640.2 385 82.1
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 2.5e-179 632.5 418 77.0
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 9.7e-176 620.5 409 75.1
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 1.9e-171 606.3 373 78.8
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 8.3e-167 590.9 404 71.5
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 6.8e-161 571.2 409 72.6
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.7e-156 556.6 357 74.8
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 2.6e-152 542.7 398 70.6
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 1.3e-151 540.4 444 65.8
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.7e-151 540.0 428 65.7
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.2e-150 535.8 424 67.5
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 1.7e-148 530.0 435 62.8
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 9.8e-144 514.2 295 84.1
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 6.4e-143 511.5 353 72.2
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 2.3e-140 503.1 345 75.9
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 1.5e-139 500.4 401 62.1
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 6.4e-135 485.0 371 64.2
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.1e-133 479.9 275 85.1
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 4.3e-131 472.2 366 63.4
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 1.2e-130 470.7 359 65.5
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 1.8e-129 466.8 270 85.2
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 2.6e-128 463.0 276 82.2
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 6.2e-122 441.8 321 71.3
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.8e-121 440.3 289 73.4
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.2e-120 437.6 412 58.3
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 6.0e-117 425.2 308 72.7
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 7.6e-112 408.3 288 71.5
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 3.8e-111 406.0 252 79.8
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 6.0e-101 372.1 307 66.8
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 1.9e-99 367.1 211 86.7
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 4.8e-98 362.5 366 51.9
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.0e-95 354.8 250 74.0
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 1.2e-93 347.8 331 52.6
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 3.9e-92 342.8 218 78.4
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 2.2e-87 327.0 201 77.1
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 2.7e-85 320.1 226 73.0
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 4.7e-77 292.7 211 70.1
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.7e-74 283.1 174 80.5
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 5.3e-65 252.7 179 70.9
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 9.4e-62 241.9 179 69.3
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 1.0e-60 238.4 136 87.5
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 3.0e-60 236.9 124 89.5
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 1.5e-59 234.6 402 37.6
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 1.3e-55 221.5 292 43.8
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 1.8e-49 201.1 134 74.6
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 2.4e-41 174.1 115 80.0
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 1.2e-37 161.8 112 77.7
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 3.6e-37 160.2 127 67.7
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 2.3e-36 157.5 101 77.2
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.6e-35 154.1 84 88.1
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 8.1e-29 132.5 77 87.0
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 4.6e-24 116.7 84 72.6
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 2.5e-22 110.9 123 55.3
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 3.3e-22 110.5 65 81.5
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 2.6e-19 100.9 60 91.7
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 6.4e-18 96.3 60 88.3
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 2.3e-15 87.8 68 64.7
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 3.0e-15 87.4 50 80.0
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 5.6e-14 83.2 58 58.6
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 5.8e-11 73.2 44 77.3
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 2.3e-07 61.2 220 25.9


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