Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 5.7e-107 391.0 203 100.0
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 4.4e-91 338.2 233 79.8
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 9.2e-89 330.5 233 78.1
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 2.3e-87 325.9 233 75.1
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 2.9e-82 308.9 233 71.7
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 8.6e-79 297.4 231 70.1
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 1.4e-76 290.0 235 67.7
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.5e-75 286.6 235 66.8
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 4.4e-75 285.0 235 66.8
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.7e-74 283.1 235 66.0
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 2.2e-74 282.7 235 63.0
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 1.1e-73 280.4 235 63.4
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 2.1e-72 276.2 236 61.9
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.5e-72 275.4 235 64.7
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 6.0e-72 274.6 232 64.7
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 6.0e-72 274.6 232 64.7
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.0e-71 273.9 233 64.8
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.3e-71 273.5 233 62.7
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 1.7e-71 273.1 235 63.0
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 2.3e-71 272.7 232 64.7
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.1e-70 270.4 235 61.3
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.5e-70 270.0 237 64.6
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.9e-70 269.6 232 65.1
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 9.5e-70 267.3 232 62.5
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.6e-69 266.5 232 63.4
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 1.1e-68 263.8 233 60.5
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 1.8e-68 263.1 235 60.4
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 6.8e-68 261.2 235 60.0
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 8.9e-68 260.8 234 58.1
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 4.4e-67 258.5 238 59.7
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 5.8e-67 258.1 234 62.0
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 9.9e-67 257.3 233 61.4
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 1.3e-66 256.9 234 59.0
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 1.7e-66 256.5 233 60.5
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 2.2e-66 256.1 235 58.3
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 2.2e-66 256.1 233 60.5
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 3.7e-66 255.4 233 60.9
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 4.9e-66 255.0 233 60.9
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 6.4e-66 254.6 232 60.3
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 6.4e-66 254.6 233 61.4
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 8.4e-66 254.2 237 58.6
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 3.2e-65 252.3 235 59.6
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 7.1e-65 251.1 232 59.1
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.2e-64 250.4 238 59.7
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.2e-64 250.4 238 59.7
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.7e-64 249.2 232 58.6
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.5e-64 248.8 232 58.6
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 3.5e-64 248.8 296 49.3
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 6.0e-64 248.1 235 55.7
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 7.8e-64 247.7 233 57.5
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 1.7e-63 246.5 231 58.4
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 2.3e-63 246.1 232 60.3
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 3.0e-63 245.7 234 58.1
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 3.0e-63 245.7 188 68.6
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 5.1e-63 245.0 232 58.6
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 8.6e-63 244.2 236 55.9
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 1.1e-62 243.8 238 57.6
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 1.1e-62 243.8 232 58.2
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 1.5e-62 243.4 234 58.5
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 1.9e-62 243.0 237 58.6
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 5.6e-62 241.5 232 56.5
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 7.3e-62 241.1 238 58.4
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 7.3e-62 241.1 232 58.6
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.2e-61 240.4 237 57.4
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.2e-61 240.4 240 55.4
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 1.6e-61 240.0 236 57.6
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.1e-61 239.6 232 57.3
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.8e-61 239.2 236 57.6
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 3.6e-61 238.8 238 55.9
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 8.1e-61 237.7 235 51.5
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 8.1e-61 237.7 235 51.5
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.4e-60 236.9 238 56.7
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 4.0e-60 235.3 244 54.1
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 8.9e-60 234.2 232 55.2
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.2e-59 233.8 235 50.2
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.5e-59 233.4 223 59.6
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.0e-59 233.0 235 50.2
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 3.4e-59 232.3 234 57.3
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 4.4e-59 231.9 234 56.0
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 1.3e-58 230.3 234 57.7
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 1.7e-58 229.9 235 53.6
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 2.9e-58 229.2 233 55.8
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 3.8e-58 228.8 227 52.4
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 3.8e-58 228.8 238 52.1
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 1.1e-57 227.3 253 52.6
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.4e-57 226.9 234 52.1
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 3.2e-57 225.7 231 56.7
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 9.3e-57 224.2 230 56.1
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.6e-56 223.4 234 52.6
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.1e-56 223.0 232 55.2
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 3.5e-56 222.2 234 52.6
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 3.5e-56 222.2 231 55.0
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 7.8e-56 221.1 191 60.7
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 3.0e-55 219.2 261 51.7
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 3.3e-54 215.7 233 48.5
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 5.6e-54 214.9 241 50.6
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 6.2e-53 211.5 240 53.3
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 6.2e-53 211.5 240 53.3
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 6.2e-53 211.5 240 53.3
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.8e-52 209.9 252 49.2
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 9.0e-52 207.6 232 47.0
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 2.6e-51 206.1 280 46.8
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 5.8e-51 204.9 237 50.2
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 7.6e-51 204.5 238 52.1
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 6.4e-50 201.4 242 50.8
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 6.4e-50 201.4 241 48.1
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.1e-49 200.7 236 51.7
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 1.4e-49 200.3 236 48.7
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 3.2e-49 199.1 233 51.9
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 5.4e-49 198.4 236 49.6
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.2e-48 197.2 236 48.7
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.6e-48 196.8 234 49.6
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 3.5e-48 195.7 205 53.2
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 4.6e-48 195.3 236 48.7
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.0e-47 194.1 236 49.2
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.7e-47 193.4 144 69.4
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 5.1e-47 191.8 240 49.6
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 5.1e-47 191.8 240 49.6
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.1e-47 191.8 242 44.6
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 6.6e-47 191.4 238 49.6
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.1e-46 190.7 144 68.1
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 1.5e-46 190.3 178 60.1
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 1.9e-46 189.9 232 49.6
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.9e-46 189.9 242 44.6
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.9e-46 189.9 242 44.6
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 2.5e-46 189.5 236 48.3
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.5e-46 189.5 144 69.4
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 3.3e-46 189.1 235 48.9
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 5.6e-46 188.3 139 70.5
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.6e-45 186.8 236 45.8
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 2.1e-45 186.4 234 50.0
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 2.8e-45 186.0 241 45.2
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 4.0e-44 182.2 242 49.6
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 6.9e-44 181.4 143 67.8
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 9.0e-44 181.0 242 49.2
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 9.0e-44 181.0 242 49.2
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 1.6e-40 170.2 219 49.8
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 3.5e-40 169.1 271 43.5
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 1.8e-39 166.8 233 42.5
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 5.6e-38 161.8 235 43.4
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.3e-37 160.6 238 42.0
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.1e-36 157.5 139 56.1
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 3.1e-36 156.0 241 44.8
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.6e-35 152.9 199 48.2
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 9.3e-33 144.4 117 64.1
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 5.1e-31 138.7 139 57.6
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 1.3e-29 134.0 152 50.0
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.8e-29 132.9 140 56.4
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.0e-27 126.7 89 70.8
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 1.0e-26 124.4 202 39.1
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.9e-26 122.9 200 42.0
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 3.2e-25 119.4 145 49.0
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 5.5e-25 118.6 200 41.5
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-23 114.0 126 50.8
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 3.9e-23 112.5 123 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 6.7e-23 111.7 205 36.6
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.5e-19 100.5 237 33.8
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.5e-17 92.0 65 67.7
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.7e-16 89.7 140 38.6
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 2.3e-15 86.7 60 75.0
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 2.0e-14 83.6 74 59.5
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.7e-10 70.5 93 48.4
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 9.4e-09 64.7 66 43.9
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.1e-08 63.5 65 49.2
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 6.1e-08 62.0 62 45.2
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 7.9e-08 61.6 216 28.2
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.9e-07 59.3 81 38.3


User provided reference genes

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