Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.6e-253 879.0 467 100.0
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 1.1e-129 467.6 359 72.1
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 2.5e-129 466.5 359 72.1
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.3e-125 454.1 257 93.4
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 7.5e-102 375.2 359 59.3
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 2.2e-98 363.6 329 62.9
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.1e-97 361.3 369 57.2
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.9e-97 360.5 389 54.5
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 9.4e-97 358.2 361 58.2
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 6.8e-95 352.1 363 57.6
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 8.8e-95 351.7 363 57.6
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.5e-94 350.9 359 56.8
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 9.8e-94 348.2 393 53.2
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 1.3e-93 347.8 392 53.3
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 4.9e-93 345.9 354 55.9
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 1.3e-90 337.8 360 54.7
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.9e-90 336.7 359 54.9
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.6e-88 330.9 364 56.6
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 2.8e-88 330.1 365 55.3
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 2.3e-87 327.0 362 53.6
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 3.0e-87 326.6 362 53.6
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 8.9e-87 325.1 370 52.2
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 1.5e-86 324.3 378 51.6
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 4.4e-86 322.8 362 56.4
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 7.5e-86 322.0 360 52.5
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 9.8e-86 321.6 362 55.5
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 2.9e-85 320.1 358 55.0
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.9e-85 319.3 400 50.0
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 6.4e-85 318.9 349 53.0
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.0e-83 313.9 364 53.3
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.7e-83 313.5 361 54.6
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.6e-83 312.8 359 50.7
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.7e-82 310.8 390 53.3
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.7e-82 310.8 395 50.4
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.7e-82 310.8 404 49.5
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 5.0e-82 309.3 412 48.8
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 6.6e-82 308.9 397 48.9
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 8.6e-82 308.5 359 53.2
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 4.3e-81 306.2 372 51.1
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 9.5e-81 305.1 357 51.8
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.2e-80 304.7 364 52.2
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.2e-80 304.7 455 45.1
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 2.1e-80 303.9 368 54.1
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.7e-80 302.8 454 44.9
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 8.0e-80 302.0 383 51.7
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.4e-79 301.2 358 54.2
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 4.0e-79 299.7 357 50.4
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 9.8e-78 295.0 360 51.1
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.3e-77 294.7 366 50.8
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 8.3e-77 292.0 363 51.0
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-76 291.6 455 43.5
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 5.4e-76 289.3 369 51.5
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 4.6e-75 286.2 365 51.0
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 2.5e-73 280.4 360 49.7
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 9.5e-73 278.5 362 46.1
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.2e-72 278.1 362 50.8
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.1e-72 277.3 240 68.8
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.8e-72 276.9 378 49.2
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 4.7e-72 276.2 354 50.3
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 8.1e-72 275.4 379 49.1
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 2.3e-71 273.9 367 46.3
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 2.3e-71 273.9 367 46.3
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.1e-71 273.5 363 47.4
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.0e-71 273.1 354 47.7
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 2.6e-70 270.4 405 45.7
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 5.8e-70 269.2 379 47.8
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 2.9e-69 266.9 321 51.1
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 5.4e-68 262.7 329 48.9
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 2.7e-67 260.4 386 43.3
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 3.5e-67 260.0 378 45.0
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 3.0e-66 256.9 370 44.9
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.0e-66 256.9 337 45.7
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 2.5e-65 253.8 372 44.6
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 5.6e-65 252.7 337 44.8
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 4.0e-63 246.5 375 43.2
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.5e-62 244.6 373 45.0
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 2.2e-61 240.7 355 44.5
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 3.2e-60 236.9 363 44.6
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.2e-59 235.0 338 45.6
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.8e-59 232.3 243 52.7
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 1.3e-58 231.5 378 42.6
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 3.9e-58 229.9 346 42.8
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 6.6e-58 229.2 340 44.4
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.5e-57 228.0 316 46.5
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 5.6e-57 226.1 373 40.8
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 1.2e-56 224.9 386 44.6
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 1.2e-56 224.9 365 43.0
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 1.1e-55 221.9 406 39.9
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 4.0e-55 219.9 401 39.4
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 4.0e-55 219.9 315 43.5
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.0e-54 217.6 358 44.4
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.1e-52 211.8 388 41.0
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 3.2e-52 210.3 358 40.8
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.1e-51 207.6 350 39.7
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 6.0e-51 206.1 350 39.4
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 1.0e-50 205.3 397 40.3
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 2.3e-50 204.1 390 40.5
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 2.3e-50 204.1 390 38.7
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 1.1e-49 201.8 399 38.1
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 1.5e-49 201.4 380 40.3
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 4.8e-48 196.4 389 39.8
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 8.1e-48 195.7 388 39.7
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 8.1e-48 195.7 388 39.7
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 2.4e-47 194.1 388 38.7
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 2.4e-47 194.1 293 45.7
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 4.0e-47 193.4 391 37.9
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 9.0e-47 192.2 388 39.9
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.3e-45 188.3 385 39.2
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 2.9e-45 187.2 366 38.3
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 7.9e-43 179.1 383 36.6
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 1.0e-42 178.7 229 50.7
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 6.6e-42 176.0 396 35.9
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 4.3e-41 173.3 382 36.1
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.6e-40 171.4 251 45.8
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 2.1e-40 171.0 255 39.6
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 2.4e-39 167.5 245 45.3
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 4.0e-39 166.8 373 36.5
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.6e-38 164.1 245 42.4
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 9.9e-38 162.2 248 44.8
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.3e-37 161.8 199 49.2
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 6.4e-37 159.5 249 38.6
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 1.4e-36 158.3 198 50.5
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 1.9e-36 157.9 259 40.2
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 4.2e-36 156.8 252 40.5
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 5.5e-36 156.4 384 35.7
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 1.6e-35 154.8 397 34.5
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 7.9e-35 152.5 257 38.1
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.3e-34 151.8 384 34.6
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 1.8e-34 151.4 232 41.4
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 3.0e-34 150.6 200 44.0
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.9e-33 147.9 350 34.0
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 3.7e-32 143.7 260 35.8
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.1e-31 142.1 218 39.9
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.4e-31 141.7 343 38.2
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 2.4e-31 141.0 189 44.4
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 3.1e-31 140.6 226 42.5
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.0e-31 140.2 224 38.8
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 1.5e-30 138.3 241 39.4
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 2.0e-30 137.9 320 33.8
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 2.6e-30 137.5 217 41.5
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 4.5e-30 136.7 192 44.8
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 7.6e-30 136.0 205 42.0
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.6e-30 136.0 234 37.2
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 1.0e-29 135.6 255 39.2
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 7.1e-28 129.4 320 34.7
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 2.7e-27 127.5 318 32.4
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 6.0e-27 126.3 261 36.8
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 7.9e-27 125.9 372 30.4
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 3.0e-26 124.0 258 35.3
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 5.1e-26 123.2 268 36.2
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 5.1e-26 123.2 210 40.0
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 1.1e-25 122.1 273 35.5
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 3.3e-25 120.6 240 36.7
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.6e-24 118.2 269 35.3
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 1.7e-21 108.2 89 55.1
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.9e-21 107.5 312 34.3
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.1e-17 95.5 178 39.9
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 9.7e-17 92.4 218 37.6
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.8e-16 90.1 103 44.7
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.8e-15 88.2 104 44.2
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 1.8e-15 88.2 104 44.2
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.2e-14 85.5 47 76.6
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.5e-14 85.1 119 38.7
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 7.7e-14 82.8 51 72.5
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.3e-13 82.0 86 48.8
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.9e-13 80.9 104 51.9
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.2e-12 76.3 110 46.4
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.6e-11 75.1 133 42.1
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 1.5e-09 68.6 92 47.8
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 8.2e-08 62.8 122 38.5


User provided reference genes

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