Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03214 Corylus avellana HOM05D008019 ORTHO05D010184 4.8e-87 324.3 148 100.0
Cfa010760 Carpinus fangiana HOM05D008019 ORTHO05D010184 2.2e-84 315.5 148 97.3
QL04p007219 Quercus lobata HOM05D008019 ORTHO05D010184 4.1e-70 268.1 142 86.6
TAR623G0854 Trochodendron aralioides HOM05D008019 ORTHO05D010184 2.0e-64 249.2 143 80.4
TAR623G1004 Trochodendron aralioides HOM05D008019 ORTHO05D010184 3.7e-63 245.0 132 82.6
CSS0044570 Camellia sinensis var. sinensis HOM05D008019 ORTHO05D010184 4.8e-63 244.6 148 77.0
Dinv43452 Davidia involucrata HOM05D008019 ORTHO05D010184 1.1e-62 243.4 141 80.9
Manes.07G005100 Manihot esculenta HOM05D008019 ORTHO05D010184 1.6e-61 239.6 145 78.6
Potri.009G062400 Populus trichocarpa HOM05D008019 ORTHO05D010184 7.7e-61 237.3 141 77.3
TWI09G1168 Tripterygium wilfordii HOM05D008019 ORTHO05D010184 1.3e-60 236.5 131 79.4
Thecc.01G411900 Theobroma cacao HOM05D008019 ORTHO05D010184 1.7e-60 236.1 145 73.8
Potri.001G268000 Populus trichocarpa HOM05D008019 ORTHO05D010184 2.9e-60 235.3 143 75.5
MD02G1313500 Malus domestica HOM05D008019 ORTHO05D010184 5.0e-60 234.6 134 78.4
Ciclev10033035m.g Citrus clementina HOM05D008019 ORTHO05D010184 8.5e-60 233.8 148 76.4
Glyma.12G238000 Glycine max HOM05D008019 ORTHO05D010184 8.5e-60 233.8 141 74.5
Prupe.2G012100 Prunus persica HOM05D008019 ORTHO05D010184 8.5e-60 233.8 141 75.9
GSVIVG01032075001 Vitis vinifera HOM05D008019 ORTHO05D010184 8.5e-60 233.8 106 95.3
Rhsim07G0054900 Rhododendron simsii HOM05D008019 ORTHO05D010184 1.5e-59 233.0 143 74.8
Nn2g15438 Nelumbo nucifera HOM05D008019 ORTHO05D010184 3.2e-59 231.9 145 75.9
Gohir.A12G094001 Gossypium hirsutum HOM05D008019 ORTHO05D010184 7.2e-59 230.7 147 70.7
RcHm_v2.0_Chr1g0315801 Rosa chinensis HOM05D008019 ORTHO05D010184 9.4e-59 230.3 134 75.4
Actinidia31058 Actinidia chinensis HOM05D008019 ORTHO05D010184 3.6e-58 228.4 116 84.5
PGR044G0644 Punica granatum HOM05D008019 ORTHO05D010184 5.2e-57 224.6 146 71.9
Phvul.011G212700 Phaseolus vulgaris HOM05D008019 ORTHO05D010184 2.0e-56 222.6 133 73.7
COL.COLO4_23925 Corchorus olitorius HOM05D008019 ORTHO05D010184 2.6e-56 222.2 148 70.9
Oeu010780.1 Olea europaea HOM05D008019 ORTHO05D010184 3.3e-56 221.9 149 71.1
Duzib138G0215 Durio zibethinus HOM05D008019 ORTHO05D010184 4.4e-56 221.5 146 70.5
FAN01G0739 Fragaria x ananassa HOM05D008019 ORTHO05D010184 4.4e-56 221.5 136 73.5
Lj3g0025736 Lotus japonicus HOM05D008019 ORTHO05D010184 4.4e-56 221.5 140 69.3
FvH4_7g00910 Fragaria vesca HOM05D008019 ORTHO05D010184 5.7e-56 221.1 136 75.7
VMungo1127G0775 Vigna mungo HOM05D008019 ORTHO05D010184 5.7e-56 221.1 133 72.9
FAN06G1027 Fragaria x ananassa HOM05D008019 ORTHO05D010184 7.5e-56 220.7 136 75.7
Gorai.008G105200 Gossypium raimondii HOM05D008019 ORTHO05D010184 1.3e-55 219.9 154 65.6
Cc02_g27810 Coffea canephora HOM05D008019 ORTHO05D010184 1.7e-55 219.5 105 87.6
CANSAT80G0909 Cannabis sativa HOM05D008019 ORTHO05D010184 8.2e-55 217.2 138 73.2
ECA248G1827 Erigeron canadensis HOM05D008019 ORTHO05D010184 1.8e-54 216.1 108 85.2
Eucgr.J01265 Eucalyptus grandis HOM05D008019 ORTHO05D010184 2.4e-54 215.7 107 86.0
HanXRQChr01g0016161 Helianthus annuus HOM05D008019 ORTHO05D010184 2.4e-54 215.7 148 68.9
TPR.G1886 Trifolium pratense HOM05D008019 ORTHO05D010184 2.4e-54 215.7 143 67.1
Lj9A631G50 Lonicera japonica HOM05D008019 ORTHO05D010184 3.1e-54 215.3 150 68.0
arahy.Tifrunner.gnm1.ann1.SF3C2I Arachis hypogaea HOM05D008019 ORTHO05D010184 4.1e-54 214.9 129 74.4
arahy.Tifrunner.gnm1.ann1.V37GBM Arachis hypogaea HOM05D008019 ORTHO05D010184 4.1e-54 214.9 138 70.3
MELO3C023543.2 Cucumis melo HOM05D008019 ORTHO05D010184 2.0e-53 212.6 134 68.7
CAN.G1155.15 Capsicum annuum HOM05D008019 ORTHO05D010184 3.5e-53 211.8 105 85.7
CsaV3_7G031160 Cucumis sativus L. HOM05D008019 ORTHO05D010184 4.5e-53 211.5 134 68.7
MSTRG.17046 Avicennia marina HOM05D008019 ORTHO05D010184 5.9e-53 211.1 108 82.4
vmacro13657 Vaccinium macrocarpon HOM05D008019 ORTHO05D010184 1.0e-52 210.3 196 55.6
MBI04_g13624_MAGBIO Magnolia biondii HOM05D008019 ORTHO05D010184 1.7e-52 209.5 140 72.1
Aqoxy7G00800 Aquilegia oxysepala HOM05D008019 ORTHO05D010184 5.0e-52 208.0 135 68.1
FAN10G3815 Fragaria x ananassa HOM05D008019 ORTHO05D010184 8.5e-52 207.2 134 72.4
ClCG09G004230 Citrullus lanatus HOM05D008019 ORTHO05D010184 1.5e-51 206.5 137 67.9
SGA_v2.0_scaffold167G38441 Striga asiatica HOM05D008019 ORTHO05D010184 7.2e-51 204.1 105 82.9
THA.LOC104819690 Tarenaya hassleriana HOM05D008019 ORTHO05D010184 7.2e-51 204.1 133 66.2
unitig_750.g28450 Utricularia gibba HOM05D008019 ORTHO05D010184 9.4e-51 203.8 131 68.7
SalBow5G2002 Salvia bowleyana HOM05D008019 ORTHO05D010184 1.2e-50 203.4 116 75.0
CDE05G1162 Ceratophyllum demersum HOM05D008019 ORTHO05D010184 1.6e-50 203.0 132 66.7
Lsat_1_v5_gn_1_107820 Lactuca sativa HOM05D008019 ORTHO05D010184 1.6e-50 203.0 121 73.6
Sabra09G0046100 Salix brachista HOM05D000752 ORTHO05D000572 1.4e-49 199.9 91 92.3
Os09g0485800 Oryza sativa ssp. japonica HOM05D008019 ORTHO05D010184 9.8e-48 193.7 112 73.2
SEGI_23902 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 5.9e-45 184.5 134 60.4
Sed0006336 Sechium edule HOM05D008019 ORTHO05D010184 4.2e-43 178.3 131 61.1
Migut.B01317 Erythranthe guttata HOM05D008019 ORTHO05D010184 1.4e-41 173.3 88 84.1
FAN03G3138 Fragaria x ananassa HOM05D008019 ORTHO05D010184 1.2e-40 170.2 100 72.0
Pp3c14_7420 Physcomitrium patens HOM05D008019 ORTHO05D010184 1.2e-40 170.2 104 68.3
Hund19732 Selenicereus undatus HOM05D008019 ORTHO05D010184 1.1e-38 163.7 76 90.8
Lalb_Chr19g0132131 Lupinus albus HOM05D008019 ORTHO05D010184 5.4e-38 161.4 77 88.3
ATR0605G214 Amborella trichopoda HOM05D008019 ORTHO05D010184 1.3e-36 156.8 77 83.1
Sc10g0000030 Simmondsia chinensis HOM05D008019 ORTHO05D010184 3.0e-33 145.6 98 69.4
Zm00001eb101800 Zea mays HOM05D008019 ORTHO05D010184 3.0e-28 129.0 93 55.9
Zm00001eb101810 Zea mays HOM05D008019 ORTHO05D010184 3.9e-28 128.6 93 55.9
Gohir.D12G096933 Gossypium hirsutum HOM05D008019 ORTHO05D010184 5.0e-28 128.3 99 61.6
SEGI_33125 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 3.1e-17 92.4 51 70.6
Medtr8g036830 Medicago truncatula HOM05D008019 ORTHO05D010184 1.4e-09 67.0 52 53.8
Lalb_Chr19g0132141 Lupinus albus HOM05D008019 ORTHO05D010184 3.4e-08 62.4 53 56.6
SEGI_37443 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 8.4e-07 57.8 38 57.9


User provided reference genes

Program Settings