Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 2.8e-274 948.0 470 100.0
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 8.7e-175 617.5 444 73.9
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 4.1e-148 528.9 441 66.0
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 2.1e-144 516.5 322 81.4
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.8e-143 513.5 440 64.1
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 3.9e-143 512.3 440 64.1
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 5.1e-143 511.9 440 64.1
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 4.8e-141 505.4 473 57.5
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 9.1e-140 501.1 463 62.0
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 8.5e-138 494.6 451 62.5
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 2.0e-134 483.4 327 76.1
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 8.2e-133 478.0 322 77.0
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 2.4e-132 476.5 446 62.3
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 4.1e-132 475.7 446 62.3
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 7.0e-132 474.9 322 76.7
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.6e-131 473.8 324 76.2
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 2.6e-131 473.0 324 75.9
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 4.5e-131 472.2 322 77.3
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 2.2e-130 469.9 322 76.4
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 6.5e-130 468.4 322 77.0
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 1.5e-129 467.2 322 75.8
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 1.8e-127 460.3 324 75.0
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 3.3e-126 456.1 328 73.8
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 4.4e-126 455.7 323 73.4
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.3e-125 454.1 324 75.0
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 8.3e-125 451.4 326 71.5
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.8e-124 450.3 323 73.4
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 7.0e-124 448.4 445 56.6
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 7.0e-124 448.4 323 73.1
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 9.1e-124 448.0 326 70.9
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.2e-123 447.6 322 72.7
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.2e-123 447.6 322 74.8
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.6e-123 447.2 320 73.8
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.6e-123 447.2 391 59.6
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.6e-123 447.2 345 68.4
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 3.5e-123 446.0 328 71.0
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 5.9e-123 445.3 326 73.9
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 5.9e-123 445.3 320 73.1
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 7.7e-123 444.9 448 56.9
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.0e-122 444.5 428 57.5
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.7e-122 443.7 323 72.4
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.7e-122 443.7 328 70.7
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 2.2e-122 443.4 328 72.3
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 2.9e-122 443.0 322 72.0
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 1.9e-121 440.3 328 69.8
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 9.4e-121 438.0 322 70.8
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 9.4e-121 438.0 320 72.5
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.6e-120 437.2 323 71.2
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.0e-119 434.5 320 72.2
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 1.8e-119 433.7 371 62.8
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 5.2e-119 432.2 325 72.3
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 6.8e-119 431.8 324 70.4
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 6.8e-119 431.8 338 68.3
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 8.8e-119 431.4 319 70.2
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 1.2e-118 431.0 324 70.4
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 1.5e-118 430.6 321 72.9
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 2.0e-118 430.3 320 72.5
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 4.4e-118 429.1 320 68.4
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 7.5e-118 428.3 321 71.3
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 4.8e-117 425.6 319 65.5
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 1.1e-116 424.5 325 65.2
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 1.4e-116 424.1 320 69.7
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 1.8e-116 423.7 397 59.4
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 2.4e-116 423.3 319 70.2
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.4e-116 423.3 322 67.4
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 5.4e-116 422.2 320 71.2
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 9.1e-116 421.4 324 67.9
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 4.5e-115 419.1 327 69.1
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 5.9e-115 418.7 318 68.9
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 5.0e-114 415.6 297 74.1
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 4.2e-113 412.5 319 69.3
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 7.2e-113 411.8 436 54.1
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 9.5e-113 411.4 385 59.7
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 2.1e-112 410.2 413 56.9
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.7e-112 409.1 336 65.8
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 1.4e-111 407.5 386 58.0
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.3e-111 406.8 324 66.7
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 2.3e-111 406.8 320 65.9
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 3.0e-111 406.4 326 67.8
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 4.0e-111 406.0 327 67.0
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 8.9e-111 404.8 320 65.3
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 1.5e-110 404.1 322 66.5
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 2.6e-110 403.3 321 67.6
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 5.7e-110 402.1 322 65.8
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.2e-109 400.2 322 65.5
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 8.3e-109 398.3 323 66.6
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 7.0e-108 395.2 324 60.5
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 9.2e-108 394.8 322 67.4
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 5.9e-107 392.1 321 65.7
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 7.8e-107 391.7 322 66.1
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 1.7e-106 390.6 297 68.7
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 9.5e-105 384.8 290 71.4
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 9.5e-105 384.8 341 63.0
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 1.6e-104 384.0 323 65.0
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 2.1e-104 383.6 323 64.7
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 3.6e-104 382.9 334 63.2
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 8.0e-104 381.7 323 64.1
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 2.3e-103 380.2 343 60.9
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 4.4e-102 375.9 297 68.4
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.3e-101 374.4 480 50.2
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.7e-101 374.0 328 63.1
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 1.7e-101 374.0 482 49.2
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 1.1e-100 371.3 324 63.0
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 3.2e-100 369.8 326 62.9
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 5.4e-100 369.0 326 61.3
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 2.0e-99 367.1 324 63.3
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 4.6e-99 365.9 326 60.1
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 7.8e-99 365.2 239 71.1
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 3.0e-98 363.2 322 55.9
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 2.5e-97 360.1 331 60.1
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 2.8e-96 356.7 271 61.3
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 4.0e-95 352.8 285 61.4
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 2.6e-94 350.1 322 60.9
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 3.4e-94 349.7 322 59.3
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 4.4e-94 349.4 320 60.3
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 1.3e-93 347.8 328 55.5
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 2.9e-93 346.7 321 59.8
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 3.7e-93 346.3 464 48.1
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 3.7e-93 346.3 321 58.9
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 4.9e-93 345.9 322 59.0
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 8.3e-93 345.1 326 57.7
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 1.9e-92 344.0 320 59.1
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.9e-92 344.0 320 59.1
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.9e-92 344.0 278 70.5
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 2.4e-92 343.6 321 58.3
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 4.1e-92 342.8 322 58.4
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 1.3e-90 337.8 381 47.8
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 2.3e-90 337.0 333 49.5
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 5.1e-90 335.9 454 47.6
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 6.6e-90 335.5 477 45.9
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 4.3e-89 332.8 327 57.2
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 9.9e-86 321.6 206 70.9
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.7e-85 320.9 461 46.0
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 1.7e-85 320.9 453 46.1
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 6.4e-85 318.9 262 63.0
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 4.1e-84 316.2 319 48.0
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 7.1e-84 315.5 335 50.7
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 2.7e-83 313.5 450 46.0
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 3.9e-82 309.7 397 49.4
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 6.6e-82 308.9 317 51.4
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 8.6e-82 308.5 423 46.3
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 1.5e-81 307.8 426 47.2
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 1.5e-81 307.8 415 46.7
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.2e-80 304.7 471 43.7
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 3.1e-79 300.1 376 47.6
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 8.9e-79 298.5 455 44.0
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 1.5e-78 297.7 515 40.2
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 1.3e-77 294.7 323 51.1
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 2.2e-77 293.9 443 44.7
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 4.6e-75 286.2 336 49.1
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 4.8e-72 276.2 322 52.2
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 8.1e-72 275.4 322 54.0
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 4.4e-70 269.6 322 47.8
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 6.0e-67 259.2 203 62.1
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 4.5e-62 243.0 322 44.1
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.6e-59 234.6 326 44.5
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 1.6e-59 234.6 335 46.0
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 4.9e-53 213.0 354 42.1
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.5e-52 209.5 173 59.5
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 2.5e-49 200.7 185 47.6
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 5.5e-44 183.0 337 33.2
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 6.1e-43 179.5 93 86.0
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 6.3e-32 142.9 70 90.0
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 1.5e-30 138.3 70 88.6
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 5.7e-17 93.2 105 60.0
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 3.5e-14 84.0 149 30.9
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 5.9e-14 83.2 38 92.1
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 1.3e-13 82.0 48 75.0
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 2.8e-08 64.3 94 62.8
Cpa.g.c29767.2 Carica papaya HOM05D003920 ORTHO05D004877 7.0e-07 59.7 86 43.0


User provided reference genes

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