Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 0.0e+00 1973.7 994 100.0
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 0.0e+00 1895.6 994 95.6
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 0.0e+00 1883.2 994 95.0
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 0.0e+00 1546.2 985 79.9
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 0.0e+00 1531.9 951 80.9
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 0.0e+00 1240.7 982 64.6
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 0.0e+00 1230.3 1010 63.6
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 0.0e+00 1227.2 993 63.3
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 0.0e+00 1221.5 987 63.9
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 0.0e+00 1213.7 992 63.8
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 0.0e+00 1201.8 998 61.8
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 0.0e+00 1166.4 977 60.5
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 0.0e+00 1161.0 993 60.2
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 0.0e+00 1161.0 994 60.4
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 0.0e+00 1154.8 967 61.1
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 0.0e+00 1148.3 969 60.7
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 0.0e+00 1147.1 977 59.8
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 0.0e+00 1083.9 945 60.4
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 6.8e-312 1074.7 979 58.5
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 3.0e-310 1068.5 973 58.7
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 2.6e-306 1055.4 1001 55.6
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 2.6e-301 1038.9 989 54.6
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 3.4e-285 985.3 994 52.2
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 7.5e-285 984.2 1001 52.6
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 4.5e-282 974.9 996 51.9
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 1.0e-281 973.8 970 52.5
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 1.1e-280 970.3 978 53.0
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 2.8e-279 965.7 1002 51.6
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 2.6e-277 959.1 994 53.6
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 1.0e-273 947.2 994 50.3
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 3.5e-258 895.6 786 58.0
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 1.0e-257 894.0 1079 46.9
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 3.3e-256 889.0 987 50.3
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 3.3e-256 889.0 985 49.1
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 3.1e-254 882.5 1087 46.7
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 3.0e-249 865.9 1205 43.4
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 5.8e-213 745.3 493 74.4
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 1.5e-208 730.7 496 73.2
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 1.3e-207 727.6 608 61.5
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 3.4e-205 719.5 499 69.9
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 5.1e-201 705.7 467 73.4
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 8.8e-201 704.9 548 65.9
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.0e-200 703.7 516 66.9
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 3.4e-197 693.0 775 49.8
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 8.5e-196 688.3 455 72.1
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 5.5e-195 685.6 471 69.6
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.2e-194 684.5 449 73.1
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 3.9e-193 679.5 460 73.0
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 1.3e-191 674.5 473 70.0
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 2.2e-191 673.7 1298 35.1
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 3.1e-190 669.8 476 66.8
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 5.5e-187 659.1 496 66.1
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 7.2e-187 658.7 452 68.6
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 4.4e-184 649.4 455 65.3
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 2.9e-180 636.7 468 66.2
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 5.0e-180 636.0 496 64.3
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 1.2e-178 631.3 468 66.0
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 1.2e-178 631.3 468 65.8
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 2.7e-178 630.2 468 63.5
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 6.1e-178 629.0 384 77.9
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 3.0e-177 626.7 470 63.8
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 4.4e-176 622.9 476 64.7
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 5.7e-176 622.5 467 62.5
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 2.8e-175 620.2 466 64.4
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 1.3e-172 611.3 454 64.8
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 7.2e-171 605.5 455 62.0
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 2.1e-170 604.0 455 61.3
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 3.6e-170 603.2 455 61.8
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 4.8e-167 592.8 455 62.6
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 2.0e-165 587.4 1101 34.7
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 1.1e-163 581.6 445 64.0
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 9.5e-163 578.6 455 62.6
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 6.1e-162 575.9 471 60.3
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 6.1e-162 575.9 455 62.4
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 1.0e-161 575.1 454 62.3
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 2.3e-161 573.9 1084 34.5
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 2.3e-161 573.9 723 47.4
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 9.8e-160 568.5 455 61.5
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 2.8e-159 567.0 453 61.4
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 1.8e-158 564.3 456 62.9
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 2.4e-158 563.9 445 63.1
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 7.0e-158 562.4 445 62.2
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 1.6e-157 561.2 445 62.0
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.6e-157 561.2 455 61.3
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 1.6e-157 561.2 455 58.7
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 5.9e-157 559.3 445 62.5
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.1e-155 555.1 455 60.7
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 2.1e-154 550.8 455 60.7
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 2.6e-152 543.9 1045 35.1
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 2.6e-152 543.9 477 58.7
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 9.8e-152 542.0 475 59.2
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 7.0e-150 535.8 352 73.0
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 1.2e-149 535.0 1061 33.6
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 2.3e-148 530.8 336 75.3
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 3.7e-143 513.5 642 47.0
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 1.9e-142 511.1 364 68.7
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 1.0e-140 505.4 458 53.5
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 4.7e-138 496.5 458 57.0
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 4.7e-138 496.5 458 57.0
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 3.4e-136 490.3 709 42.0
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 1.3e-135 488.4 364 64.0
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 4.6e-133 479.9 471 52.9
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 8.9e-129 465.7 350 65.4
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 1.4e-126 458.4 979 33.0
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 1.8e-121 441.4 552 44.6
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 3.1e-121 440.7 373 59.5
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 3.2e-118 430.6 467 45.6
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 1.2e-112 412.1 363 58.7
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 7.6e-104 382.9 467 45.0
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 5.7e-99 366.7 416 43.8
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 1.8e-97 361.7 367 52.9
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.9e-92 344.0 257 65.4
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 4.2e-78 297.4 316 48.7
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 1.8e-73 282.0 458 40.0
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 4.1e-73 280.8 196 73.0
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 1.9e-70 271.9 256 53.1
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 2.7e-69 268.1 206 63.6
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 2.0e-67 261.9 179 70.9
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 7.7e-64 250.0 168 67.9
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 2.7e-61 241.5 189 64.0
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 1.5e-43 182.6 124 68.5
TAR628G0523 Trochodendron aralioides HOM05D002030 ORTHO05D007413 4.7e-37 161.0 235 41.3
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 4.0e-36 157.9 316 35.4
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 2.0e-27 129.0 146 48.6
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.4e-25 122.9 628 24.8
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.2e-19 103.2 62 69.4
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 7.3e-14 84.0 79 55.7
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 1.1e-09 70.1 124 37.1
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 2.3e-07 62.4 42 54.8


User provided reference genes

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