Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 4.8e-132 474.6 247 100.0
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 1.0e-110 403.7 247 87.4
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 5.9e-90 334.7 232 77.6
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 8.0e-79 297.7 239 68.2
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 8.6e-73 277.7 246 66.7
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 1.5e-72 276.9 233 67.0
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 3.1e-70 269.2 246 60.6
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 4.0e-70 268.9 239 64.0
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 1.5e-69 266.9 235 63.0
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.5e-69 266.9 238 64.7
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 3.4e-69 265.8 235 62.6
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 4.4e-69 265.4 243 59.3
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 7.5e-69 264.6 231 62.3
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 9.8e-69 264.2 248 60.9
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 3.7e-68 262.3 239 62.3
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 1.1e-67 260.8 244 61.9
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 1.4e-67 260.4 234 62.4
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 3.2e-67 259.2 232 64.2
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 4.1e-67 258.8 234 61.5
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 4.1e-67 258.8 234 62.0
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 1.6e-66 256.9 248 59.7
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 3.5e-66 255.8 219 67.6
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 4.6e-66 255.4 233 59.2
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 6.0e-66 255.0 224 67.0
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 1.0e-65 254.2 251 58.6
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 1.0e-65 254.2 248 61.7
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 1.7e-65 253.4 238 60.5
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 3.9e-65 252.3 258 60.5
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 6.6e-65 251.5 251 58.2
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 8.6e-65 251.1 224 62.1
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 8.6e-65 251.1 231 60.2
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 1.5e-64 250.4 226 60.2
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 1.9e-64 250.0 249 60.6
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 1.9e-64 250.0 228 59.6
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 2.5e-64 249.6 226 62.8
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 4.3e-64 248.8 240 62.1
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 7.3e-64 248.1 237 62.9
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 9.5e-64 247.7 237 62.9
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 1.2e-63 247.3 251 57.4
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 3.6e-63 245.7 220 63.2
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 3.6e-63 245.7 220 67.3
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 3.6e-63 245.7 229 62.4
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 4.7e-63 245.4 232 61.6
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 4.7e-63 245.4 220 64.1
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 8.1e-63 244.6 228 60.5
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 1.8e-62 243.4 247 55.9
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 1.8e-62 243.4 245 56.7
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 3.1e-62 242.7 229 59.4
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 3.1e-62 242.7 244 59.4
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 4.4e-61 238.8 233 57.5
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 4.4e-61 238.8 255 57.6
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 7.5e-61 238.0 278 51.4
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 6.4e-60 235.0 223 60.5
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 8.3e-60 234.6 261 56.3
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 8.3e-60 234.6 250 58.4
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 1.4e-59 233.8 244 55.3
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 2.4e-59 233.0 233 58.8
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 4.1e-59 232.3 260 56.2
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 5.4e-59 231.9 250 57.6
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 1.2e-58 230.7 238 55.0
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 2.7e-58 229.6 258 57.8
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 3.5e-58 229.2 250 56.4
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 6.0e-58 228.4 255 54.1
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 1.0e-57 227.6 222 57.7
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 1.3e-57 227.3 222 57.7
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 1.3e-57 227.3 222 57.7
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 1.3e-57 227.3 222 57.7
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 1.3e-57 227.3 225 61.8
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 5.1e-57 225.3 245 55.1
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 6.6e-57 224.9 191 64.4
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 8.6e-57 224.6 226 57.5
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 1.9e-56 223.4 196 62.2
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 3.3e-56 222.6 206 59.2
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 3.3e-56 222.6 228 56.6
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 4.3e-56 222.2 244 53.7
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 4.3e-56 222.2 244 53.7
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 4.3e-56 222.2 241 53.9
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 7.3e-56 221.5 246 53.3
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 9.5e-56 221.1 181 64.6
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 9.5e-56 221.1 240 55.8
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 1.2e-55 220.7 240 52.5
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 2.1e-55 219.9 197 62.4
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 2.8e-55 219.5 232 53.9
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 4.7e-55 218.8 228 56.1
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 4.7e-55 218.8 222 58.6
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 8.1e-55 218.0 199 61.3
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 1.1e-54 217.6 191 62.8
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 1.1e-54 217.6 224 57.1
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 2.3e-54 216.5 232 55.6
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 6.8e-54 214.9 228 55.3
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 2.0e-53 213.4 223 54.3
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 4.4e-53 212.2 212 57.1
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 7.6e-53 211.5 187 63.1
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 7.6e-53 211.5 187 63.1
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 1.3e-52 210.7 250 50.4
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 4.9e-52 208.8 233 51.9
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 6.4e-52 208.4 257 48.6
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 1.1e-51 207.6 223 52.5
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 3.2e-51 206.1 197 59.4
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 6.0e-50 201.8 237 54.4
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 1.0e-49 201.1 237 49.4
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 5.6e-48 195.3 197 57.4
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 3.6e-47 192.6 183 57.4
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 4.7e-47 192.2 134 74.6
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 1.4e-46 190.7 177 61.0
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 3.1e-46 189.5 183 57.9
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 1.5e-45 187.2 147 66.0
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 1.7e-44 183.7 199 49.7
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 9.3e-43 177.9 156 66.0
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 2.1e-42 176.8 222 51.4
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 6.0e-42 175.3 145 64.1
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 1.5e-40 170.6 173 59.5
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 2.5e-40 169.9 187 51.3
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 7.3e-40 168.3 246 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 5.8e-37 158.7 213 45.5
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 5.8e-37 158.7 142 63.4
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 4.9e-36 155.6 190 49.5
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 8.4e-36 154.8 179 50.3
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 2.7e-34 149.8 194 49.0
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 4.6e-34 149.1 128 64.1
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 1.3e-31 141.0 108 65.7
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 4.8e-31 139.0 180 48.3
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.8e-30 137.1 214 44.9
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 1.4e-27 127.5 104 58.7
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 7.9e-18 95.1 116 50.9
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 2.5e-16 90.1 236 33.5
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 3.3e-16 89.7 244 33.6
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 7.6e-13 78.6 122 42.6
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 6.5e-12 75.5 101 47.5
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 8.2e-07 58.5 55 52.7
BolC7t45992H Brassica oleracea HOM05D005878 ORTHO05D033170 1.8e-06 57.4 53 69.8


User provided reference genes

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