Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 3.8e-73 278.1 142 100.0
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 1.8e-67 259.2 132 100.0
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 6.3e-60 234.2 133 89.5
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 3.1e-59 231.9 132 87.9
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 7.2e-56 220.7 136 83.8
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 7.2e-56 220.7 133 82.7
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 7.9e-55 217.2 133 82.0
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 3.9e-54 214.9 133 79.7
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 5.1e-54 214.5 133 79.7
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 1.1e-53 213.4 134 80.6
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 1.5e-53 213.0 133 80.5
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.5e-53 213.0 133 80.5
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.9e-53 212.6 135 76.3
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 2.5e-53 212.2 133 78.2
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 2.5e-53 212.2 134 80.6
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 7.4e-53 210.7 133 79.7
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 7.4e-53 210.7 133 78.2
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 9.7e-53 210.3 134 80.6
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 9.7e-53 210.3 133 79.7
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.3e-52 209.9 133 79.7
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.3e-52 209.9 133 78.2
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 1.3e-52 209.9 133 76.7
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 1.3e-52 209.9 133 77.4
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.6e-52 209.5 133 79.7
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.2e-52 209.1 133 79.7
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 2.2e-52 209.1 133 79.7
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 2.2e-52 209.1 134 79.9
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 4.8e-52 208.0 134 79.1
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 8.2e-52 207.2 135 76.3
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 1.1e-51 206.8 134 75.4
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.4e-51 206.5 136 75.0
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 1.4e-51 206.5 133 75.9
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.8e-51 206.1 134 78.4
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 5.3e-51 204.5 135 74.1
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 5.3e-51 204.5 132 75.0
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 6.9e-51 204.1 135 77.8
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 9.1e-51 203.8 133 77.4
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 1.2e-50 203.4 135 76.3
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 1.5e-50 203.0 134 73.9
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 1.5e-50 203.0 133 77.4
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.6e-50 202.2 132 76.5
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 2.6e-50 202.2 133 74.4
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 2.6e-50 202.2 132 73.5
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 3.4e-50 201.8 133 75.2
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 4.5e-50 201.4 136 78.7
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 4.5e-50 201.4 136 72.1
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 7.7e-50 200.7 134 76.1
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 7.7e-50 200.7 131 74.8
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 1.0e-49 200.3 137 75.9
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 1.3e-49 199.9 132 74.2
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 1.7e-49 199.5 134 73.9
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 2.9e-49 198.7 135 75.6
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 3.8e-49 198.4 136 75.7
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 6.5e-49 197.6 132 75.8
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 1.1e-48 196.8 132 73.5
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 1.4e-48 196.4 137 74.5
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 1.4e-48 196.4 134 73.9
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 1.9e-48 196.1 133 73.7
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 1.9e-48 196.1 132 71.2
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 2.5e-48 195.7 134 72.4
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 2.5e-48 195.7 135 72.6
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 2.5e-48 195.7 133 71.4
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 3.2e-48 195.3 133 74.4
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 4.2e-48 194.9 133 75.9
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 5.5e-48 194.5 134 74.6
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 5.5e-48 194.5 134 74.6
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 7.2e-48 194.1 136 71.3
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 7.2e-48 194.1 132 72.7
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 3.6e-47 191.8 136 70.6
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 4.6e-47 191.4 134 70.9
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 7.9e-47 190.7 135 72.6
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 7.9e-47 190.7 136 72.1
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.0e-46 190.3 132 74.2
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.3e-46 189.1 135 74.1
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 3.0e-46 188.7 136 69.9
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 3.0e-46 188.7 134 71.6
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 3.9e-46 188.3 136 70.6
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 5.1e-46 188.0 135 69.6
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 8.8e-46 187.2 134 69.4
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 8.8e-46 187.2 134 69.4
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 8.8e-46 187.2 134 69.4
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 8.8e-46 187.2 134 69.4
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 1.1e-45 186.8 132 71.2
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 2.6e-45 185.7 133 72.9
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 3.3e-45 185.3 137 68.6
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 4.4e-45 184.9 137 70.1
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 4.4e-45 184.9 135 68.9
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 5.7e-45 184.5 133 69.9
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 9.7e-45 183.7 135 68.1
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 1.3e-44 183.3 134 67.2
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 1.7e-44 183.0 135 72.6
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 2.2e-44 182.6 135 68.1
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.2e-44 182.6 137 71.5
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 3.7e-44 181.8 115 80.9
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 1.8e-43 179.5 129 69.0
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 5.3e-43 177.9 135 68.1
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 9.1e-43 177.2 126 72.2
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 1.5e-42 176.4 121 73.6
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 1.5e-42 176.4 138 66.7
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 1.5e-42 176.4 131 69.5
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 1.5e-42 176.4 165 60.0
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.0e-42 176.0 151 64.2
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 3.4e-42 175.3 133 61.7
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 5.9e-42 174.5 133 66.9
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 5.9e-42 174.5 133 66.2
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 7.7e-42 174.1 103 79.6
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 2.9e-41 172.2 137 67.2
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 5.0e-41 171.4 140 62.1
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 8.5e-41 170.6 206 51.9
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 4.2e-40 168.3 124 72.6
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 7.2e-40 167.5 140 60.0
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 1.2e-39 166.8 101 83.2
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 2.7e-39 165.6 135 63.0
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 1.0e-38 163.7 103 79.6
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 1.4e-38 163.3 115 75.7
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 3.9e-38 161.8 104 74.0
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 8.8e-38 160.6 141 61.7
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 5.7e-37 157.9 109 74.3
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 1.7e-36 156.4 138 57.2
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 3.1e-35 152.1 87 83.9
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 2.1e-31 139.4 88 81.8
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 1.0e-30 137.1 116 60.3
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 2.3e-30 136.0 86 73.3
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 5.2e-30 134.8 108 68.5
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 2.0e-29 132.9 85 71.8
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 3.3e-29 132.1 190 45.8
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 4.4e-29 131.7 103 59.2
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 2.2e-28 129.4 68 91.2
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 3.7e-28 128.6 107 67.3
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 1.1e-27 127.1 133 59.4
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 4.1e-27 125.2 86 69.8
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 9.1e-27 124.0 134 52.2
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.0e-25 120.6 86 64.0
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 6.1e-23 111.3 86 59.3
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 1.8e-22 109.8 86 64.0
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.6e-21 105.9 69 73.9
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 3.4e-21 105.5 69 79.7
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 7.2e-16 87.8 61 68.9
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 1.3e-09 67.0 40 77.5
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 2.9e-09 65.9 37 83.8
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 2.3e-06 56.2 96 33.3
THA.LOC104799611 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 6.8e-06 54.7 95 34.7


User provided reference genes

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