Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 3.6e-122 441.8 256 100.0
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 4.7e-74 282.0 245 75.5
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.3e-60 237.3 250 52.4
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 4.0e-57 225.7 246 51.6
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 2.1e-37 160.2 251 39.8
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 5.6e-35 152.1 264 38.3
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 1.8e-33 147.1 251 37.8
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 2.4e-33 146.7 249 37.8
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.4e-32 142.9 258 40.3
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 7.6e-32 141.7 255 36.9
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.1e-30 137.9 252 38.1
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 4.2e-30 136.0 138 52.9
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 6.0e-29 132.1 250 34.4
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 2.3e-28 130.2 257 37.0
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 6.7e-28 128.6 251 38.2
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 8.7e-28 128.3 256 35.5
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 8.7e-28 128.3 215 40.0
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.5e-27 126.7 258 38.4
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 1.2e-24 117.9 59 89.8
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.1e-21 107.1 256 33.6
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 6.7e-20 102.1 129 43.4
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 7.4e-19 98.6 270 33.3
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.3e-15 87.8 235 31.1
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.9e-15 86.7 159 40.9
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.5e-11 74.3 48 62.5
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 5.7e-11 72.4 177 34.5
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 1.3e-10 71.2 148 35.1
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 1.3e-10 71.2 148 33.1
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 1.3e-10 71.2 59 57.6
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 3.7e-10 69.7 48 60.4
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 3.7e-10 69.7 48 60.4
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 3.7e-10 69.7 74 45.9
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 4.8e-10 69.3 48 58.3
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 4.8e-10 69.3 53 64.2
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 6.3e-10 68.9 182 30.8
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.3e-10 68.9 48 58.3
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 6.3e-10 68.9 48 60.4
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 6.3e-10 68.9 73 42.5
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 8.2e-10 68.6 48 58.3
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 8.2e-10 68.6 48 58.3
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 8.2e-10 68.6 48 58.3
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 8.2e-10 68.6 48 58.3
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 8.2e-10 68.6 48 58.3
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 8.2e-10 68.6 48 58.3
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 8.2e-10 68.6 48 58.3
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 8.2e-10 68.6 48 58.3
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 8.2e-10 68.6 163 31.3
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.1e-09 68.2 82 46.3
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 1.1e-09 68.2 54 55.6
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 1.1e-09 68.2 48 58.3
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.1e-09 68.2 48 58.3
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.1e-09 68.2 48 58.3
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.1e-09 68.2 48 58.3
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 1.1e-09 68.2 83 42.2
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.1e-09 68.2 48 58.3
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.4e-09 67.8 169 32.5
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.4e-09 67.8 76 44.7
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.4e-09 67.8 76 46.1
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 1.4e-09 67.8 148 32.4
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.4e-09 67.8 76 46.1
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 1.8e-09 67.4 48 56.2
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.8e-09 67.4 48 58.3
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 1.8e-09 67.4 82 43.9
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.8e-09 67.4 48 56.2
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.4e-09 67.0 55 54.5
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 2.4e-09 67.0 48 56.2
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 2.4e-09 67.0 48 56.2
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.4e-09 67.0 169 32.5
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 2.4e-09 67.0 48 56.2
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 2.4e-09 67.0 81 42.0
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.4e-09 67.0 48 58.3
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.4e-09 67.0 48 56.2
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 2.4e-09 67.0 48 56.2
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 3.1e-09 66.6 48 56.2
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 3.1e-09 66.6 48 56.2
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 3.1e-09 66.6 48 56.2
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 3.1e-09 66.6 48 56.2
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 3.1e-09 66.6 148 33.8
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 3.1e-09 66.6 148 33.8
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 3.1e-09 66.6 48 58.3
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 3.1e-09 66.6 168 31.0
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.1e-09 66.6 48 58.3
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 3.1e-09 66.6 54 53.7
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 3.1e-09 66.6 170 33.5
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 3.1e-09 66.6 48 56.2
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.1e-09 66.6 48 58.3
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 4.1e-09 66.2 148 33.1
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 4.1e-09 66.2 48 56.2
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 4.1e-09 66.2 48 56.2
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 5.3e-09 65.9 80 41.2
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 5.3e-09 65.9 82 42.7
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 5.3e-09 65.9 48 56.2
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 6.9e-09 65.5 81 42.0
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 6.9e-09 65.5 48 56.2
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 6.9e-09 65.5 80 41.2
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 6.9e-09 65.5 48 56.2
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 6.9e-09 65.5 48 56.2
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 9.1e-09 65.1 48 54.2
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 9.1e-09 65.1 54 53.7
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 9.1e-09 65.1 54 53.7
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 9.1e-09 65.1 41 63.4
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 9.1e-09 65.1 70 45.7
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 9.1e-09 65.1 150 35.3
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 9.1e-09 65.1 48 54.2
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 9.1e-09 65.1 48 54.2
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 9.1e-09 65.1 148 33.8
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 1.2e-08 64.7 48 54.2
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.2e-08 64.7 148 33.1
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.2e-08 64.7 160 31.9
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.5e-08 64.3 51 54.9
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.5e-08 64.3 40 65.0
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.5e-08 64.3 165 30.9
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 1.5e-08 64.3 40 62.5
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.0e-08 63.9 48 54.2
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 2.0e-08 63.9 48 54.2
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 2.0e-08 63.9 48 54.2
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 2.0e-08 63.9 48 54.2
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 2.0e-08 63.9 48 54.2
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 2.0e-08 63.9 48 54.2
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.0e-08 63.9 40 65.0
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 2.0e-08 63.9 48 54.2
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 2.0e-08 63.9 48 54.2
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 2.0e-08 63.9 49 55.1
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 2.6e-08 63.5 48 54.2
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 2.6e-08 63.5 166 32.5
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 2.6e-08 63.5 48 54.2
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 2.6e-08 63.5 48 54.2
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 2.6e-08 63.5 48 54.2
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 2.6e-08 63.5 166 31.9
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 3.4e-08 63.2 173 31.2
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 3.4e-08 63.2 68 48.5
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 4.5e-08 62.8 46 56.5
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 4.5e-08 62.8 169 32.5
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 4.5e-08 62.8 48 54.2
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 4.5e-08 62.8 249 27.7
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 4.5e-08 62.8 166 30.1
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 4.5e-08 62.8 166 30.1
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 5.9e-08 62.4 45 53.3
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 5.9e-08 62.4 45 53.3
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 5.9e-08 62.4 43 55.8
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 5.9e-08 62.4 48 52.1
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 7.7e-08 62.0 39 64.1
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.0e-07 61.6 172 30.8
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 1.0e-07 61.6 40 60.0
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.0e-07 61.6 175 30.9
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 1.3e-07 61.2 249 28.5
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 1.3e-07 61.2 161 31.7
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.3e-07 61.2 41 61.0
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.7e-07 60.8 79 43.0
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.2e-07 60.5 37 64.9
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 2.2e-07 60.5 149 32.2
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 2.9e-07 60.1 44 50.0
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 3.8e-07 59.7 53 50.9
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 3.8e-07 59.7 47 53.2
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 3.8e-07 59.7 48 50.0
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 3.8e-07 59.7 82 41.5
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 6.5e-07 58.9 40 60.0
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.5e-07 58.9 242 28.1
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 8.5e-07 58.5 44 56.8
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 8.5e-07 58.5 244 27.5
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 8.5e-07 58.5 44 50.0
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 8.5e-07 58.5 31 67.7
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 1.1e-06 58.2 47 51.1
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 1.1e-06 58.2 40 52.5
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 3.2e-06 56.6 30 66.7
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 3.2e-06 56.6 251 26.7
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 3.2e-06 56.6 39 51.3
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 4.2e-06 56.2 34 61.8
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 5.5e-06 55.8 45 48.9
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 9.4e-06 55.1 40 57.5


User provided reference genes

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