Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.1e-142 510.0 267 100.0
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 9.4e-126 453.8 257 93.4
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 1.4e-97 360.1 268 73.5
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 1.2e-96 357.1 268 73.1
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 1.7e-79 300.1 270 62.6
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.8e-76 290.0 269 61.0
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 5.4e-73 278.5 271 59.8
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.2e-72 277.3 271 59.8
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.1e-72 276.6 253 60.5
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 2.3e-71 273.1 269 57.6
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 3.6e-69 265.8 270 55.2
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 4.8e-69 265.4 301 53.5
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 8.1e-69 264.6 267 55.8
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 6.9e-68 261.5 254 58.3
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 2.2e-66 256.5 271 54.6
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 2.9e-66 256.1 253 57.7
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.1e-65 254.2 270 54.4
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 3.2e-65 252.7 273 55.3
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.6e-64 250.4 270 54.8
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 3.5e-64 249.2 266 56.8
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 7.9e-64 248.1 272 54.4
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.3e-63 247.3 262 56.5
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.8e-63 246.9 254 57.9
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 3.0e-63 246.1 272 54.8
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.0e-63 246.1 257 57.2
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.0e-63 246.1 271 52.8
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.0e-63 246.1 270 55.2
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 3.9e-63 245.7 283 52.3
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 2.1e-61 240.0 264 53.0
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 2.1e-61 240.0 269 55.8
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 6.2e-61 238.4 270 53.0
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.8e-60 236.9 259 56.8
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 3.1e-60 236.1 267 52.4
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 5.3e-60 235.3 272 53.7
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.0e-60 234.6 253 55.3
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 1.2e-59 234.2 288 51.0
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.0e-59 233.4 271 50.9
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 3.4e-59 232.6 266 53.8
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 7.6e-59 231.5 274 52.6
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.0e-58 231.1 275 54.9
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 1.3e-58 230.7 272 51.8
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.2e-58 229.9 265 55.8
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 1.1e-57 227.6 283 50.2
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.4e-57 227.3 270 51.1
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 3.2e-57 226.1 301 51.5
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 4.2e-57 225.7 302 48.3
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 4.2e-57 225.7 272 52.9
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 5.5e-57 225.3 278 52.2
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.2e-56 224.2 207 58.5
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 3.5e-56 222.6 285 48.8
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 4.6e-56 222.2 269 47.2
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 8.7e-55 218.0 283 50.2
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.1e-54 217.6 277 50.2
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 2.5e-54 216.5 238 53.8
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 7.4e-54 214.9 268 50.0
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 4.8e-53 212.2 275 46.9
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 4.8e-53 212.2 274 47.4
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 4.8e-53 212.2 274 47.4
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 2.4e-52 209.9 269 49.1
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 5.3e-52 208.8 276 47.1
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 5.3e-52 208.8 270 50.4
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 5.3e-52 208.8 278 47.5
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 6.9e-52 208.4 275 45.5
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.0e-51 206.8 277 49.1
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 2.0e-51 206.8 254 48.8
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.0e-51 206.8 275 45.5
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 5.9e-51 205.3 278 46.4
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 2.2e-50 203.4 274 50.7
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 5.0e-50 202.2 275 49.1
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 6.5e-50 201.8 275 49.1
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.9e-49 200.3 264 51.9
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 9.3e-49 198.0 277 45.1
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.6e-48 197.2 274 46.4
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 2.3e-47 193.4 278 46.0
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 3.9e-47 192.6 253 47.4
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 5.1e-47 192.2 265 45.7
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 6.7e-47 191.8 272 47.8
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 6.7e-47 191.8 272 47.8
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 1.5e-46 190.7 285 46.7
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 2.5e-46 189.9 265 45.3
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.3e-45 187.6 276 48.6
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.2e-45 186.8 278 44.6
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 2.2e-45 186.8 279 47.0
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 9.0e-44 181.4 272 45.2
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 1.2e-43 181.0 295 42.4
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 5.9e-43 178.7 141 71.6
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 5.9e-43 178.7 229 50.7
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.3e-42 177.6 273 45.1
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 3.8e-42 176.0 276 44.2
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.1e-41 174.5 271 43.2
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.1e-41 174.5 297 39.4
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 1.4e-41 174.1 272 44.9
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.9e-41 173.7 279 41.6
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 4.2e-41 172.6 275 44.4
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 4.2e-41 172.6 301 41.2
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.6e-40 170.6 261 44.8
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 6.1e-40 168.7 273 42.9
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.4e-39 167.5 277 42.6
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 1.8e-39 167.2 255 44.3
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 5.1e-39 165.6 265 38.5
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.1e-38 164.5 268 44.8
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.5e-38 164.1 268 44.8
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 2.0e-38 163.7 269 44.6
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 3.3e-38 162.9 268 44.4
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 3.3e-38 162.9 268 44.4
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 4.3e-38 162.5 208 46.6
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 2.2e-37 160.2 268 44.0
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 8.2e-37 158.3 258 43.0
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.4e-36 156.8 268 41.8
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.1e-36 156.0 275 39.3
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 4.1e-36 156.0 255 39.6
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 6.9e-36 155.2 270 40.0
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 6.9e-36 155.2 255 39.6
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 9.1e-36 154.8 208 48.1
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 1.5e-35 154.1 268 39.2
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.0e-35 153.7 262 39.7
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 7.7e-35 151.8 259 37.1
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 5.0e-34 149.1 267 37.1
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 1.1e-33 147.9 242 39.7
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.4e-33 147.5 212 42.5
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 2.5e-33 146.7 277 37.9
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 2.5e-33 146.7 277 37.9
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 4.2e-33 146.0 279 39.8
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 2.1e-32 143.7 199 44.2
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 7.9e-32 141.7 256 41.4
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 3.9e-31 139.4 180 51.7
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.5e-30 137.5 228 39.0
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 2.0e-30 137.1 270 34.8
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.4e-30 136.0 234 38.0
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 7.4e-30 135.2 236 41.1
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 7.4e-30 135.2 283 36.0
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 9.7e-30 134.8 291 35.4
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 1.3e-29 134.4 227 40.1
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 1.7e-29 134.0 254 38.6
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.8e-29 132.5 215 40.5
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 8.2e-29 131.7 244 36.5
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 4.1e-28 129.4 279 38.0
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 5.3e-28 129.0 202 42.1
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 5.3e-28 129.0 265 37.7
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 9.1e-28 128.3 293 40.3
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 3.5e-27 126.3 279 36.9
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 3.5e-27 126.3 279 36.9
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 1.3e-26 124.4 275 35.6
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 1.7e-26 124.0 231 34.6
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 8.5e-26 121.7 298 35.2
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 2.5e-25 120.2 220 38.6
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 3.2e-25 119.8 270 37.0
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 5.5e-25 119.0 268 35.1
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 9.4e-25 118.2 274 34.3
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.6e-24 117.5 286 34.3
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 2.1e-24 117.1 211 37.4
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.7e-24 116.7 249 34.5
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 4.0e-23 112.8 279 35.1
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 5.2e-23 112.5 278 33.8
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 7.0e-20 102.1 99 50.5
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.0e-15 86.7 113 43.4
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.2e-14 84.7 114 43.0
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 1.2e-14 84.7 114 43.0
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.5e-14 84.3 47 74.5
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 9.8e-14 81.6 51 70.6
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.3e-13 81.3 129 38.0
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 7.0e-12 75.5 122 37.7
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 1.2e-11 74.7 92 50.0
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 8.0e-08 62.0 104 43.3


User provided reference genes

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