Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 1.4e-38 162.5 83 100.0
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 7.7e-34 146.7 81 90.1
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 2.2e-33 145.2 77 93.5
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 6.1e-31 137.1 81 85.2
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 2.5e-24 115.2 77 75.3
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 7.5e-21 103.6 69 75.4
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 2.0e-18 95.5 77 59.7
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 7.7e-18 93.6 67 68.7
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 1.0e-17 93.2 77 58.4
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 1.7e-17 92.4 65 67.7
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 1.7e-17 92.4 65 67.7
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 3.8e-17 91.3 78 61.5
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 3.8e-17 91.3 78 64.1
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 6.5e-17 90.5 80 60.0
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 6.5e-17 90.5 74 62.2
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 6.5e-17 90.5 79 62.0
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 6.5e-17 90.5 74 60.8
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 6.5e-17 90.5 78 61.5
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 1.1e-16 89.7 78 61.5
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 1.5e-16 89.4 66 63.6
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 1.5e-16 89.4 62 71.0
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 1.5e-16 89.4 62 71.0
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 3.2e-16 88.2 62 69.4
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 3.2e-16 88.2 63 65.1
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.6e-15 85.9 62 61.3
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 2.1e-15 85.5 80 56.2
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.1e-15 85.5 60 63.3
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 2.7e-15 85.1 79 54.4
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 3.6e-15 84.7 73 58.9
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 4.7e-15 84.3 83 53.0
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 4.7e-15 84.3 77 57.1
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 6.1e-15 84.0 63 61.9
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 6.1e-15 84.0 63 61.9
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 8.0e-15 83.6 74 55.4
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 8.0e-15 83.6 62 59.7
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 1.0e-14 83.2 60 66.7
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 1.4e-14 82.8 72 61.1
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 1.4e-14 82.8 78 59.0
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 1.8e-14 82.4 67 64.2
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 2.3e-14 82.0 62 61.3
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 2.3e-14 82.0 78 57.7
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 2.3e-14 82.0 58 70.7
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 3.0e-14 81.6 63 60.3
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 3.0e-14 81.6 85 51.8
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 4.0e-14 81.3 67 58.2
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 4.0e-14 81.3 67 58.2
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 4.0e-14 81.3 60 66.7
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 6.8e-14 80.5 72 59.7
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 6.8e-14 80.5 88 52.3
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 6.8e-14 80.5 66 63.6
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 6.8e-14 80.5 74 60.8
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 1.2e-13 79.7 58 67.2
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 1.5e-13 79.3 71 53.5
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 1.5e-13 79.3 59 67.8
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 2.0e-13 79.0 67 59.7
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 2.0e-13 79.0 58 67.2
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 3.4e-13 78.2 74 59.5
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 3.4e-13 78.2 59 67.8
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 5.7e-13 77.4 73 57.5
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 5.7e-13 77.4 68 54.4
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 5.7e-13 77.4 62 59.7
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 9.8e-13 76.6 62 64.5
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 1.7e-12 75.9 56 67.9
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 2.2e-12 75.5 57 61.4
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 2.8e-12 75.1 81 51.9
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 2.8e-12 75.1 81 51.9
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 2.8e-12 75.1 57 64.9
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 3.7e-12 74.7 69 58.0
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 8.3e-12 73.6 56 64.3
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 8.3e-12 73.6 72 56.9
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 1.1e-11 73.2 83 47.0
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 1.1e-11 73.2 54 72.2
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 1.8e-11 72.4 56 60.7
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 1.8e-11 72.4 83 47.0
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 2.4e-11 72.0 80 47.5
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 2.4e-11 72.0 56 60.7
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 4.1e-11 71.2 81 51.9
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 4.1e-11 71.2 71 49.3
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.4e-11 70.9 84 47.6
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.4e-11 70.9 84 47.6
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 9.1e-11 70.1 55 65.5
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 9.1e-11 70.1 58 62.1
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 9.1e-11 70.1 77 49.4
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 2.0e-10 68.9 58 60.3
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 2.7e-10 68.6 59 57.6
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 2.7e-10 68.6 84 46.4
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.7e-10 68.6 84 46.4
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.7e-10 68.6 84 46.4
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.5e-10 68.2 84 46.4
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.5e-10 68.2 84 46.4
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 4.5e-10 67.8 63 55.6
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 5.9e-10 67.4 57 61.4
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.3e-09 66.2 76 50.0
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 1.3e-09 66.2 69 53.6
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.7e-09 65.9 76 50.0
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 1.7e-09 65.9 52 71.2
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 2.9e-09 65.1 50 66.0
ATR0767G212 Amborella trichopoda HOM05D006948 ORTHO05D008703 8.5e-09 63.5 66 54.5
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 8.5e-09 63.5 58 55.2
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 8.5e-09 63.5 56 53.6
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 8.5e-09 63.5 54 61.1
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 1.9e-08 62.4 57 56.1
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 2.5e-08 62.0 56 55.4
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 3.2e-08 61.6 52 63.5
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 4.2e-08 61.2 54 61.1
DCAR_025075 Daucus carota HOM05D006948 ORTHO05D008703 9.4e-08 60.1 66 53.0
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 9.4e-08 60.1 69 49.3
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 1.6e-07 59.3 45 62.2
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 1.8e-06 55.8 48 56.2
MD07G1101100 Malus domestica HOM05D006948 ORTHO05D008703 5.2e-06 54.3 42 61.9
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 6.8e-06 53.9 70 42.9


User provided reference genes

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