Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02745 Corylus avellana HOM05D000104 ORTHO05D013430 8.6e-35 149.8 79 100.0
QL04p034775 Quercus lobata HOM05D000104 ORTHO05D008354 2.1e-20 102.1 61 78.7
Thecc.01G387600 Theobroma cacao HOM05D000104 ORTHO05D008354 1.1e-18 96.3 85 61.2
RcHm_v2.0_Chr1g0346091 Rosa chinensis HOM05D000104 ORTHO05D008354 7.3e-18 93.6 64 75.0
Duzib133G0313 Durio zibethinus HOM05D000104 ORTHO05D008354 9.6e-18 93.2 85 58.8
COL.COLO4_12448 Corchorus olitorius HOM05D000104 ORTHO05D008354 1.3e-17 92.8 60 76.7
GSVIVG01018218001 Vitis vinifera HOM05D000104 ORTHO05D008354 1.3e-17 92.8 84 60.7
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 2.8e-17 91.7 85 58.8
Prupe.2G122400 Prunus persica HOM05D000104 ORTHO05D008354 6.2e-17 90.5 64 70.3
Dinv44094 Davidia involucrata HOM05D000104 ORTHO05D008354 8.1e-17 90.1 64 67.2
FAN06G0717 Fragaria x ananassa HOM05D000104 ORTHO05D008354 8.1e-17 90.1 60 73.3
FAN06G1402 Fragaria x ananassa HOM05D000104 ORTHO05D008354 8.1e-17 90.1 60 73.3
FvH4_7g09450 Fragaria vesca HOM05D000104 ORTHO05D008354 1.1e-16 89.7 63 71.4
FAN10G0005 Fragaria x ananassa HOM05D000104 ORTHO05D008354 1.1e-16 89.7 60 73.3
Thhalv10001305m.g Eutrema salsugineum HOM05D000104 ORTHO05D008354 1.4e-16 89.4 63 69.8
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 1.4e-16 89.4 85 57.6
Manes.04G038200 Manihot esculenta HOM05D000104 ORTHO05D008354 1.4e-16 89.4 64 67.2
MD07G1098400 Malus domestica HOM05D000104 ORTHO05D008354 1.8e-16 89.0 64 70.3
AT2G44980 Arabidopsis thaliana HOM05D000104 ORTHO05D008354 1.2e-15 86.3 64 67.2
FAN10G3495 Fragaria x ananassa HOM05D000104 ORTHO05D008354 1.2e-15 86.3 59 72.9
PGR004G1640 Punica granatum HOM05D000104 ORTHO05D008354 1.5e-15 85.9 61 68.9
C04p05940 Brassica napus HOM05D000104 ORTHO05D008354 2.6e-15 85.1 61 68.9
BolC4t22225H Brassica oleracea HOM05D000104 ORTHO05D008354 2.6e-15 85.1 61 68.9
THA.LOC104802482 Tarenaya hassleriana HOM05D000104 ORTHO05D008354 2.6e-15 85.1 64 68.8
TAR503G0004 Trochodendron aralioides HOM05D000104 ORTHO05D008354 2.6e-15 85.1 62 66.1
Sp4g27050 Schrenkiella parvula HOM05D000104 ORTHO05D008354 4.5e-15 84.3 64 67.2
Aa31LG1G26570 Aethionema arabicum HOM05D000104 ORTHO05D008354 5.8e-15 84.0 64 65.6
Aqoxy5G04143 Aquilegia oxysepala HOM05D000104 ORTHO05D008354 7.6e-15 83.6 64 60.9
CSS0013679 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D008354 7.6e-15 83.6 60 63.3
BraA05t19483Z Brassica rapa HOM05D000104 ORTHO05D008354 1.3e-14 82.8 61 65.6
ClCG06G002490 Citrullus lanatus HOM05D000104 ORTHO05D008354 1.7e-14 82.4 60 70.0
A05p05090 Brassica napus HOM05D000104 ORTHO05D008354 2.2e-14 82.0 61 65.6
MELO3C022279.2 Cucumis melo HOM05D000104 ORTHO05D008354 2.9e-14 81.6 60 66.7
TPR.G39130 Trifolium pratense HOM05D000104 ORTHO05D013430 4.9e-14 80.9 68 60.3
AUR62004136 Chenopodium quinoa HOM05D000104 ORTHO05D008354 6.4e-14 80.5 64 64.1
Solyc01g090650.1 Solanum lycopersicum HOM05D000104 ORTHO05D008354 6.4e-14 80.5 64 62.5
Cc02_g24760 Coffea canephora HOM05D000104 ORTHO05D008354 8.4e-14 80.1 68 60.3
Glyma.01G073400 Glycine max HOM05D000104 ORTHO05D008354 8.4e-14 80.1 64 62.5
CARHR140240 Cardamine hirsuta HOM05D000104 ORTHO05D008354 1.1e-13 79.7 61 63.9
Rhsim07G0033300 Rhododendron simsii HOM05D001240 ORTHO05D008354 1.1e-13 79.7 74 56.8
Ca_07352_v3 Cicer arietinum L. HOM05D000104 ORTHO05D008354 1.4e-13 79.3 60 63.3
ECA236G2937 Erigeron canadensis HOM05D000104 ORTHO05D008354 1.4e-13 79.3 65 63.1
Sed0015521 Sechium edule HOM05D000104 ORTHO05D008354 1.4e-13 79.3 64 62.5
Lj7C540T8 Lonicera japonica HOM05D000104 ORTHO05D008354 2.4e-13 78.6 66 57.6
MBI04_g09528_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D008354 2.4e-13 78.6 71 54.9
PGSC0003DMG400025981 Solanum tuberosum HOM05D000104 ORTHO05D008354 2.4e-13 78.6 64 60.9
PSO384G1113 Papaver somniferum HOM05D000104 ORTHO05D008354 3.2e-13 78.2 65 55.4
Phvul.008G141500 Phaseolus vulgaris HOM05D000104 ORTHO05D008354 3.2e-13 78.2 64 59.4
Sopen01g036380 Solanum pennellii HOM05D000104 ORTHO05D008354 3.2e-13 78.2 64 60.9
Ciclev10018815m.g Citrus clementina HOM05D000104 ORTHO05D008354 4.2e-13 77.8 71 59.2
CANSAT21G1228 Cannabis sativa HOM05D000104 ORTHO05D008354 5.4e-13 77.4 64 64.1
Nn1g00931 Nelumbo nucifera HOM05D000104 ORTHO05D008354 5.4e-13 77.4 65 63.1
VMungo1383G2128 Vigna mungo HOM05D000104 ORTHO05D008354 5.4e-13 77.4 61 62.3
AL4G44080 Arabidopsis lyrata HOM05D000104 ORTHO05D008354 7.1e-13 77.0 64 64.1
Lj1g0027884 Lotus japonicus HOM05D000104 ORTHO05D008354 7.1e-13 77.0 64 57.8
CDE11G0513 Ceratophyllum demersum HOM05D000104 ORTHO05D008354 9.3e-13 76.6 61 62.3
Lsat_1_v5_gn_7_11220 Lactuca sativa HOM05D000104 ORTHO05D008354 9.3e-13 76.6 76 52.6
Lalb_Chr03g0040101 Lupinus albus HOM05D000104 ORTHO05D008354 9.3e-13 76.6 65 58.5
Sabra14G0041300 Salix brachista HOM05D000104 ORTHO05D008354 1.2e-12 76.3 88 51.1
Atru.chr5.195 Acer truncatum HOM05D000104 ORTHO05D008354 1.6e-12 75.9 66 63.6
HanXRQChr06g0168811 Helianthus annuus HOM05D000104 ORTHO05D008354 1.6e-12 75.9 65 56.9
PSO407G0156 Papaver somniferum HOM05D000104 ORTHO05D008354 1.6e-12 75.9 65 55.4
EL10Ac1g00807 Beta vulgaris HOM05D000104 ORTHO05D008354 2.1e-12 75.5 63 60.3
Medtr7g039320 Medicago truncatula HOM05D000104 ORTHO05D008354 2.7e-12 75.1 64 57.8
PSO384G0152 Papaver somniferum HOM05D000104 ORTHO05D008354 2.7e-12 75.1 65 53.8
Psat3g158480 Pisum sativum HOM05D000104 ORTHO05D013430 2.7e-12 75.1 60 63.3
PSO170G6209 Papaver somniferum HOM05D000104 ORTHO05D008354 3.5e-12 74.7 65 55.4
Potri.014G056700 Populus trichocarpa HOM05D000104 ORTHO05D008354 4.6e-12 74.3 88 50.0
arahy.Tifrunner.gnm1.ann1.G09REB Arachis hypogaea HOM05D000104 ORTHO05D008354 6.0e-12 73.9 60 60.0
Hund17069 Selenicereus undatus HOM05D000104 ORTHO05D008354 6.0e-12 73.9 62 66.1
Migut.B01564 Erythranthe guttata HOM05D000104 ORTHO05D013430 7.9e-12 73.6 79 55.7
Medtr7g045502 Medicago truncatula HOM05D000104 ORTHO05D013430 7.9e-12 73.6 61 57.4
Nitab4.5_0004415g0060 Nicotiana tabacum HOM05D000104 ORTHO05D008354 7.9e-12 73.6 64 56.2
DCAR_032106 Daucus carota HOM05D000104 ORTHO05D008354 1.0e-11 73.2 84 52.4
SGA_v2.0_scaffold153G36942 Striga asiatica HOM05D000104 ORTHO05D008354 1.8e-11 72.4 76 57.9
Oeu009614.2 Olea europaea HOM05D000104 ORTHO05D008354 2.3e-11 72.0 64 56.2
PSO782G4873 Papaver somniferum HOM05D000104 ORTHO05D013430 3.0e-11 71.6 65 49.2
Nitab4.5_0003110g0070 Nicotiana tabacum HOM05D000104 ORTHO05D008354 3.9e-11 71.2 60 58.3
SalBow5G1524 Salvia bowleyana HOM05D000104 ORTHO05D008354 6.7e-11 70.5 62 58.1
arahy.Tifrunner.gnm1.ann1.195NUB Arachis hypogaea HOM05D000104 ORTHO05D008354 1.1e-10 69.7 60 58.3
Zm00001eb404510 Zea mays HOM05D000104 ORTHO05D008354 1.1e-10 69.7 63 58.7
Peaxi162Scf00377g00830 Petunia axillaris HOM05D000104 ORTHO05D008354 2.5e-10 68.6 63 55.6
HPP92_022464 Vanilla planifolia HOM05D000104 ORTHO05D008354 5.6e-10 67.4 64 54.7
Os03g0101700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D013430 2.8e-09 65.1 78 55.1
ATR0057G042 Amborella trichopoda HOM05D000104 ORTHO05D013430 1.2e-07 59.7 61 49.2
BcaC04g19859 Brassica carinata HOM05D015057 ORTHO05D013430 1.5e-07 59.3 38 68.4
BcaNung03081 Brassica carinata HOM05D015057 ORTHO05D013430 4.5e-07 57.8 42 61.9
Mapoly0049s0090 Marchantia polymorpha HOM05D000104 ORTHO05D048811 7.6e-07 57.0 63 49.2
BcaC05g27446 Brassica carinata HOM05D015057 ORTHO05D013430 1.3e-06 56.2 44 59.1
Pp3c10_6710 Physcomitrium patens HOM05D000104 ORTHO05D008354 3.8e-06 54.7 64 45.3


User provided reference genes

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