Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 8.2e-149 530.4 275 100.0
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 1.5e-131 473.0 264 92.8
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 2.5e-129 465.7 274 87.2
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 2.9e-122 442.2 276 83.7
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 1.5e-113 413.3 274 78.1
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 2.7e-112 409.1 277 77.3
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.0e-111 407.1 278 76.3
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 2.3e-111 406.0 273 75.8
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 7.5e-110 401.0 269 75.5
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 7.5e-110 401.0 273 74.7
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.2e-109 399.4 274 74.8
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.3e-109 397.5 284 72.2
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 8.3e-109 397.5 274 74.1
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 1.8e-108 396.4 274 75.5
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 3.1e-108 395.6 275 73.5
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 4.1e-108 395.2 275 73.1
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 5.4e-108 394.8 277 75.5
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 7.0e-108 394.4 276 74.6
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 9.1e-108 394.0 275 73.8
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.6e-107 393.3 274 74.8
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 1.6e-107 393.3 275 76.0
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 1.6e-107 393.3 274 75.2
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 2.7e-107 392.5 274 73.7
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 3.5e-107 392.1 274 74.5
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 4.5e-107 391.7 275 73.8
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.0e-106 390.6 274 74.1
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 1.0e-106 390.6 275 73.5
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 2.9e-106 389.0 274 74.1
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-105 387.1 281 71.9
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 2.5e-105 386.0 271 72.3
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 4.2e-105 385.2 284 72.9
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-104 383.6 281 71.2
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-104 383.3 281 70.5
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 1.6e-104 383.3 275 71.3
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 4.7e-104 381.7 279 70.3
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 1.4e-103 380.2 274 71.5
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.4e-103 380.2 281 70.8
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 1.8e-103 379.8 277 70.8
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 2.3e-103 379.4 274 74.1
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 9.8e-102 374.0 277 69.0
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 1.3e-101 373.6 275 72.0
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 1.7e-101 373.2 307 64.8
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 2.2e-101 372.9 277 69.3
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 2.9e-101 372.5 277 69.0
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 3.7e-101 372.1 274 69.3
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 4.9e-101 371.7 277 69.3
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 4.9e-101 371.7 277 69.0
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 8.3e-101 370.9 277 69.7
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 1.1e-100 370.5 274 68.6
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.4e-100 370.2 277 69.3
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 7.0e-100 367.9 272 69.5
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 9.2e-100 367.5 279 68.5
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 9.2e-100 367.5 277 68.2
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.3e-98 363.6 275 66.9
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.3e-98 363.6 284 67.6
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.3e-98 363.6 271 68.6
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 1.7e-98 363.2 275 69.8
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 2.8e-96 355.9 251 72.5
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 2.8e-96 355.9 276 68.5
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 4.7e-96 355.1 277 67.5
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 1.0e-95 354.0 276 68.1
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 1.0e-95 354.0 274 68.2
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 1.4e-95 353.6 278 68.7
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 2.3e-95 352.8 275 67.6
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 3.1e-95 352.4 276 66.3
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 3.1e-95 352.4 252 72.6
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 4.0e-95 352.1 277 68.6
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 2.0e-94 349.7 281 67.3
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 2.6e-94 349.4 277 67.9
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 2.2e-93 346.3 274 66.8
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.1e-92 344.0 270 65.9
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.1e-92 344.0 276 66.7
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.4e-92 343.6 263 70.0
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 1.9e-92 343.2 275 65.1
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 3.2e-92 342.4 342 55.8
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 7.0e-92 341.3 277 66.4
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 2.0e-91 339.7 270 66.3
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 3.5e-91 339.0 274 66.4
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 3.9e-90 335.5 275 64.0
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 8.6e-90 334.3 274 66.1
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 3.3e-89 332.4 274 65.7
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 4.3e-89 332.0 223 74.9
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 4.3e-89 332.0 275 64.7
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 9.8e-86 320.9 275 62.2
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.3e-85 320.5 266 63.9
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 5.1e-82 308.5 274 60.2
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 1.9e-81 306.6 275 63.6
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 2.8e-80 302.8 271 60.1
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 3.4e-78 295.8 278 58.6
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 7.6e-78 294.7 260 62.3
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 6.6e-74 281.6 274 58.4
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.1e-72 276.6 196 71.9
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 5.2e-71 271.9 291 54.0
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 2.0e-70 270.0 185 73.5
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 9.9e-70 267.7 272 52.6
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 4.2e-68 262.3 274 53.3
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 3.3e-65 252.7 198 66.2
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 4.3e-65 252.3 251 59.0
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 1.6e-59 233.8 252 55.2
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 1.0e-58 231.1 271 49.4
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 1.1e-55 221.1 200 61.0
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 1.4e-52 210.7 276 44.6
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 1.9e-52 210.3 155 70.3
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 2.5e-49 199.9 272 40.4
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 8.1e-48 194.9 232 45.7
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 1.4e-47 194.1 347 40.1
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.5e-38 164.1 136 63.2
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.5e-38 164.1 120 74.2
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.6e-38 161.8 120 73.3
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 4.2e-36 156.0 112 71.4
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 2.7e-35 153.3 146 56.8
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 7.9e-35 151.8 140 55.0
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 6.7e-34 148.7 112 67.9
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 2.8e-32 143.3 146 54.1
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 1.5e-30 137.5 160 50.0
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 2.2e-29 133.7 90 76.7
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 1.4e-28 131.0 90 74.4
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 2.5e-28 130.2 112 64.3
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 1.6e-27 127.5 104 62.5
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 8.8e-26 121.7 278 32.4
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 2.2e-24 117.1 261 32.2
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 3.7e-24 116.3 114 59.6
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 8.2e-24 115.2 66 83.3
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.2e-22 111.3 116 56.9
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 3.2e-20 103.2 124 50.8
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 3.2e-20 103.2 74 68.9
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 5.5e-20 102.4 118 50.0
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-19 101.3 141 43.3
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 2.7e-19 100.1 74 68.9
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 2.3e-18 97.1 111 54.1
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 1.1e-17 94.7 56 85.7
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.6e-17 93.6 74 64.9
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 6.1e-11 72.4 104 42.3
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 6.7e-10 68.9 82 47.6
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 8.8e-10 68.6 68 55.9
FAN06G0568 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.2e-08 63.9 56 55.4


User provided reference genes

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