Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 2.3e-157 558.9 289 100.0
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 1.5e-145 519.6 276 96.4
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 5.8e-137 491.1 276 90.6
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 1.2e-131 473.4 276 85.9
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 2.1e-131 472.6 276 85.5
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 2.1e-131 472.6 276 85.5
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 4.7e-131 471.5 276 86.6
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 1.4e-130 469.9 276 85.1
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 5.2e-130 468.0 276 85.1
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 4.4e-129 464.9 284 81.7
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 3.8e-128 461.8 276 83.7
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 6.4e-128 461.1 276 83.0
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 3.2e-127 458.8 276 83.0
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 7.8e-126 454.1 276 81.5
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 3.9e-125 451.8 275 81.8
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 5.1e-125 451.4 276 82.2
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 6.6e-125 451.1 277 81.2
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 8.7e-125 450.7 278 81.7
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 1.9e-124 449.5 275 81.5
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 4.3e-124 448.4 285 77.5
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 9.6e-124 447.2 276 80.1
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 1.6e-123 446.4 276 80.4
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 2.1e-123 446.0 276 80.8
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 2.8e-123 445.7 277 80.5
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 6.2e-123 444.5 280 80.0
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 6.2e-123 444.5 281 80.1
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 6.2e-123 444.5 277 79.8
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 6.2e-123 444.5 276 80.4
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 8.1e-123 444.1 275 80.4
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 1.8e-122 443.0 277 79.8
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 2.4e-122 442.6 275 80.4
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 3.1e-122 442.2 277 80.1
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 3.1e-122 442.2 276 80.1
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 9.0e-122 440.7 276 80.4
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 3.4e-121 438.7 275 80.4
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 7.6e-121 437.6 275 79.6
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 2.2e-120 436.0 276 76.4
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 2.2e-120 436.0 276 81.5
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 2.9e-120 435.6 275 80.0
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 1.1e-119 433.7 277 79.1
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 2.4e-119 432.6 284 75.7
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 3.2e-119 432.2 277 78.0
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 4.2e-119 431.8 276 77.2
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 4.2e-119 431.8 276 79.0
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 1.6e-118 429.9 275 77.1
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 1.6e-118 429.9 277 76.9
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 2.3e-117 426.0 275 77.1
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 3.0e-117 425.6 276 76.8
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 3.0e-117 425.6 276 76.1
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 3.0e-117 425.6 276 74.6
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 5.1e-117 424.9 275 76.7
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 8.7e-117 424.1 276 75.7
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 1.1e-116 423.7 276 76.8
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 5.6e-116 421.4 284 75.0
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 8.1e-115 417.5 276 74.6
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 1.4e-114 416.8 276 76.1
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 2.4e-114 416.0 320 67.8
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 3.1e-114 415.6 276 75.4
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 3.1e-114 415.6 276 73.9
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 4.0e-114 415.2 284 73.2
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 6.9e-114 414.5 276 75.7
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 6.9e-114 414.5 275 74.9
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 9.0e-114 414.1 276 76.1
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 9.0e-114 414.1 276 75.0
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 1.5e-113 413.3 276 75.4
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 1.5e-113 413.3 276 75.7
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 1.5e-113 413.3 276 73.9
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 2.6e-113 412.5 276 76.1
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 2.6e-113 412.5 276 76.1
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 2.6e-113 412.5 276 76.1
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 3.4e-113 412.1 276 75.4
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 4.5e-113 411.8 276 75.0
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 5.8e-113 411.4 284 73.2
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 7.6e-113 411.0 276 74.6
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 1.7e-112 409.8 271 74.9
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 1.7e-112 409.8 276 73.6
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 2.2e-112 409.5 275 74.9
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 4.9e-112 408.3 275 74.2
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 6.4e-112 407.9 284 72.5
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 6.4e-112 407.9 276 74.3
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 3.2e-111 405.6 262 78.2
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 1.8e-109 399.8 262 77.5
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 2.5e-108 396.0 276 71.4
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 3.3e-108 395.6 276 72.1
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 2.4e-106 389.4 259 74.1
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 1.3e-104 383.6 253 76.7
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 1.9e-103 379.8 282 67.4
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 2.3e-101 372.9 251 73.7
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 3.9e-101 372.1 278 67.6
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 1.5e-100 370.2 277 67.9
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 4.3e-100 368.6 324 61.1
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 1.3e-99 367.1 278 69.8
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 6.0e-94 348.2 276 66.3
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 7.4e-92 341.3 276 65.2
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 9.0e-90 334.3 276 67.4
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 1.5e-89 333.6 218 77.5
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 1.3e-88 330.5 221 75.6
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 8.5e-88 327.8 199 85.9
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 1.8e-85 320.1 200 81.0
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 1.8e-85 320.1 182 90.7
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 1.2e-78 297.4 217 69.6
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 4.7e-78 295.4 176 83.5
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 2.0e-76 290.0 238 63.4
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 3.1e-74 282.7 287 50.5
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 4.1e-74 282.3 181 79.0
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 2.5e-71 273.1 278 49.3
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.5e-63 246.5 187 67.4
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 4.7e-62 242.3 281 45.6
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 2.6e-60 236.5 250 50.0
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 4.5e-49 199.1 300 39.3
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 2.3e-45 186.8 290 38.6
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 1.0e-40 171.4 93 89.2
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 1.9e-39 167.2 283 38.5
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 3.9e-32 142.9 306 31.4
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 1.2e-28 131.3 162 49.4
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 7.6e-20 102.1 96 53.1
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.4e-18 97.8 64 76.6
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 4.7e-14 82.8 76 56.6
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 4.0e-13 79.7 58 62.1
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 2.2e-11 73.9 43 81.4
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 1.9e-10 70.9 237 25.7
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 1.3e-08 64.7 302 24.8


User provided reference genes

Program Settings