Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 2.5e-30 134.8 69 100.0
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 1.2e-27 125.9 67 94.0
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 6.0e-24 113.6 67 85.1
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 7.6e-19 96.7 64 73.4
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 7.6e-19 96.7 64 73.4
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 7.6e-19 96.7 64 73.4
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 3.8e-18 94.4 61 75.4
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 3.8e-18 94.4 61 75.4
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 1.2e-16 89.4 51 86.3
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 2.1e-16 88.6 65 70.8
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 3.5e-16 87.8 73 64.4
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 3.5e-16 87.8 55 76.4
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 7.8e-16 86.7 61 70.5
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 1.0e-15 86.3 60 70.0
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 1.3e-15 85.9 50 84.0
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 1.3e-15 85.9 62 71.0
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 1.3e-15 85.9 49 85.7
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.7e-15 85.5 62 71.0
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 2.3e-15 85.1 71 64.8
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 3.9e-15 84.3 46 89.1
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 5.1e-15 84.0 49 81.6
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 5.1e-15 84.0 46 89.1
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 6.6e-15 83.6 49 83.7
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 6.6e-15 83.6 64 68.8
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 8.7e-15 83.2 73 61.6
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 8.7e-15 83.2 60 70.0
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 8.7e-15 83.2 49 81.6
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 8.7e-15 83.2 49 79.6
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 1.1e-14 82.8 53 81.1
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 1.1e-14 82.8 50 82.0
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 1.5e-14 82.4 49 81.6
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 1.5e-14 82.4 56 75.0
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.5e-14 82.4 54 79.6
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 1.9e-14 82.0 62 67.7
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 1.9e-14 82.0 49 83.7
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 1.9e-14 82.0 53 77.4
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 2.5e-14 81.6 71 66.2
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.3e-14 81.3 73 60.3
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 3.3e-14 81.3 62 67.7
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 3.3e-14 81.3 49 81.6
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 4.3e-14 80.9 62 64.5
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 4.3e-14 80.9 64 67.2
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 4.3e-14 80.9 57 68.4
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 4.3e-14 80.9 72 66.7
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 5.6e-14 80.5 49 81.6
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 5.6e-14 80.5 56 71.4
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 5.6e-14 80.5 49 77.6
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 7.3e-14 80.1 60 66.7
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 9.6e-14 79.7 49 79.6
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 9.6e-14 79.7 49 79.6
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 9.6e-14 79.7 67 64.2
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 1.6e-13 79.0 49 81.6
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 1.6e-13 79.0 62 64.5
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 1.6e-13 79.0 60 63.3
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 1.6e-13 79.0 48 83.3
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.6e-13 79.0 49 79.6
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 1.6e-13 79.0 55 72.7
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 2.1e-13 78.6 62 66.1
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 2.1e-13 78.6 62 66.1
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 2.1e-13 78.6 62 66.1
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 2.8e-13 78.2 67 61.2
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 2.8e-13 78.2 60 66.7
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 2.8e-13 78.2 49 75.5
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 3.6e-13 77.8 47 83.0
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 3.6e-13 77.8 54 70.4
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 8.1e-13 76.6 49 77.6
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 8.1e-13 76.6 54 72.2
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 1.1e-12 76.3 49 75.5
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 1.1e-12 76.3 51 68.6
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 1.1e-12 76.3 49 75.5
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 1.4e-12 75.9 54 70.4
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 1.8e-12 75.5 67 59.7
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 1.8e-12 75.5 45 82.2
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 4.0e-12 74.3 47 80.9
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 5.3e-12 73.9 50 76.0
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 6.9e-12 73.6 49 73.5
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 9.0e-12 73.2 48 75.0
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 1.2e-11 72.8 49 71.4
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 2.6e-11 71.6 46 78.3
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 2.6e-11 71.6 46 78.3
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 4.5e-11 70.9 61 60.7
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 5.8e-11 70.5 49 71.4
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 5.8e-11 70.5 50 76.0
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 7.6e-11 70.1 48 72.9
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 9.9e-11 69.7 49 69.4
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 9.9e-11 69.7 58 60.3
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 1.3e-10 69.3 49 71.4
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 1.3e-10 69.3 61 54.1
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.7e-10 68.9 48 68.8
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 2.9e-10 68.2 49 67.3
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 3.8e-10 67.8 49 71.4
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 3.8e-10 67.8 49 69.4
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 4.9e-10 67.4 49 57.1
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 6.4e-10 67.0 49 67.3
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 6.4e-10 67.0 49 65.3
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 8.4e-10 66.6 61 52.5
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 2.4e-09 65.1 49 61.2
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 3.2e-09 64.7 40 77.5
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 1.2e-08 62.8 65 52.3
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 6.7e-07 57.0 51 54.9
Cc05_g02990 Coffea canephora HOM05D004478 ORTHO05D018907 2.5e-06 55.1 56 51.8


User provided reference genes

Program Settings