Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 1.5e-73 279.6 165 100.0
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 2.7e-62 242.3 165 91.5
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 2.6e-41 172.6 168 63.1
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 5.8e-41 171.4 171 64.3
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 1.9e-28 129.8 167 52.7
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 3.3e-28 129.0 149 56.4
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 4.3e-28 128.6 165 50.9
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 6.2e-27 124.8 168 56.0
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 1.4e-26 123.6 150 50.7
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.4e-26 123.6 166 50.0
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 1.8e-26 123.2 170 50.6
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 3.1e-26 122.5 171 57.9
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 3.1e-26 122.5 170 59.4
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 6.9e-26 121.3 169 48.5
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 6.9e-26 121.3 166 50.0
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 9.0e-26 120.9 167 50.9
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 3.4e-25 119.0 170 49.4
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 7.6e-25 117.9 130 56.9
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 7.6e-25 117.9 168 50.0
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 7.6e-25 117.9 168 50.0
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 1.3e-24 117.1 169 48.5
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.7e-24 116.7 128 57.0
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 3.8e-24 115.5 151 48.3
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 6.4e-24 114.8 120 55.8
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 6.4e-24 114.8 169 49.1
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 1.4e-23 113.6 169 47.9
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 4.2e-23 112.1 150 46.7
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 4.2e-23 112.1 171 48.5
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 1.2e-22 110.5 76 76.3
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 1.2e-22 110.5 77 80.5
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 2.1e-22 109.8 77 79.2
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 6.0e-22 108.2 167 55.1
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 1.3e-21 107.1 172 55.8
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 2.3e-21 106.3 154 56.5
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 3.9e-21 105.5 70 81.4
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 1.5e-20 103.6 120 53.3
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.5e-20 103.6 76 72.4
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 2.5e-20 102.8 70 78.6
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 3.3e-20 102.4 167 49.1
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 4.3e-20 102.1 134 56.7
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 5.6e-20 101.7 166 50.0
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 1.3e-19 100.5 76 73.7
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 1.3e-19 100.5 71 76.1
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 2.8e-19 99.4 69 79.7
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 3.6e-19 99.0 72 73.6
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 3.6e-19 99.0 171 45.0
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 4.8e-19 98.6 71 73.2
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 4.8e-19 98.6 114 56.1
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 6.2e-19 98.2 76 71.1
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 6.2e-19 98.2 121 53.7
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 1.1e-18 97.4 166 45.8
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 1.8e-18 96.7 99 59.6
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 2.4e-18 96.3 74 73.0
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 3.1e-18 95.9 66 83.3
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 3.1e-18 95.9 66 83.3
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 5.3e-18 95.1 70 77.1
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 5.3e-18 95.1 157 52.2
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 6.9e-18 94.7 169 45.0
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 1.2e-17 94.0 167 47.3
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 1.2e-17 94.0 160 43.1
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 1.5e-17 93.6 79 69.6
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 1.5e-17 93.6 70 72.9
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 1.5e-17 93.6 66 80.3
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 1.5e-17 93.6 66 80.3
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 4.5e-17 92.0 79 69.6
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 5.8e-17 91.7 79 68.4
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 7.6e-17 91.3 161 46.0
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 1.3e-16 90.5 76 68.4
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 1.7e-16 90.1 68 73.5
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 1.1e-15 87.4 77 61.0
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 1.1e-15 87.4 76 71.1
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 1.1e-15 87.4 76 71.1
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 1.9e-15 86.7 70 74.3
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 1.9e-15 86.7 114 47.4
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 2.4e-15 86.3 73 63.0
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 3.2e-15 85.9 77 63.6
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 4.2e-15 85.5 70 72.9
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 5.5e-15 85.1 78 64.1
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 6.0e-14 81.6 65 69.2
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 1.3e-13 80.5 149 49.7
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 2.3e-13 79.7 129 41.9
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 8.7e-13 77.8 134 41.0
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 3.7e-11 72.4 69 58.0
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 3.7e-11 72.4 70 55.7
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 8.1e-11 71.2 67 58.2
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 1.1e-10 70.9 64 62.5
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 5.3e-10 68.6 51 62.7
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 1.2e-09 67.4 64 60.9
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 2.2e-08 63.2 64 59.4


User provided reference genes

Program Settings