Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 8.8e-157 557.0 296 100.0
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 3.4e-116 422.2 295 79.3
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 2.4e-93 346.3 292 68.5
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 9.6e-87 324.3 300 62.3
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 1.8e-85 320.1 295 64.4
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 5.6e-79 298.5 300 64.0
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 4.0e-77 292.4 300 62.0
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 4.5e-76 288.9 299 61.2
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 9.9e-76 287.7 299 61.2
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 9.9e-76 287.7 293 58.0
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 2.2e-75 286.6 297 59.3
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 2.2e-75 286.6 293 59.4
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 6.4e-75 285.0 297 60.3
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 7.1e-74 281.6 299 60.9
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 9.3e-74 281.2 298 60.7
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 6.7e-72 275.0 299 59.9
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 1.1e-71 274.2 300 57.0
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 2.5e-71 273.1 299 57.5
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 3.3e-71 272.7 298 56.7
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 5.6e-71 271.9 297 57.9
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 2.8e-70 269.6 293 55.6
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 8.1e-70 268.1 298 56.0
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 8.1e-70 268.1 293 56.7
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 1.8e-69 266.9 345 52.8
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 2.4e-69 266.5 293 55.3
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 1.2e-68 264.2 297 54.5
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 1.2e-68 264.2 293 54.9
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 2.6e-68 263.1 299 55.2
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 4.5e-68 262.3 293 55.3
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 5.8e-68 261.9 294 55.8
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 5.8e-68 261.9 301 58.5
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 7.6e-68 261.5 293 54.9
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 8.4e-67 258.1 294 56.5
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.1e-66 257.7 294 56.5
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 1.1e-66 257.7 294 56.5
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 4.2e-66 255.8 295 56.3
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.2e-66 255.8 314 54.8
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 5.5e-66 255.4 294 54.4
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.2e-65 254.2 314 54.8
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 1.8e-64 250.4 296 54.1
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 6.7e-64 248.4 295 53.9
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 3.3e-63 246.1 305 54.8
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 9.6e-63 244.6 298 52.3
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 1.6e-62 243.8 300 53.7
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 6.3e-62 241.9 300 52.7
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 3.1e-61 239.6 300 52.7
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 9.0e-61 238.0 301 54.5
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.0e-60 236.9 302 53.6
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 3.4e-60 236.1 296 51.7
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 1.3e-59 234.2 298 53.7
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 7.2e-58 228.4 292 50.3
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 7.2e-58 228.4 300 52.0
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 9.3e-58 228.0 300 52.3
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 1.6e-57 227.3 317 49.8
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 4.6e-57 225.7 264 51.9
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.3e-54 217.6 294 49.0
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 6.3e-54 215.3 296 51.0
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.0e-52 210.3 302 49.7
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 2.0e-52 210.3 304 48.4
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 5.9e-52 208.8 296 50.3
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 2.5e-50 203.4 291 51.5
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.2e-50 203.0 298 49.0
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 4.2e-50 202.6 300 47.3
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 5.5e-50 202.2 293 48.5
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 5.5e-50 202.2 299 49.8
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.2e-49 201.1 295 46.4
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 1.4e-48 197.6 299 49.2
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.4e-48 197.6 295 47.1
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.0e-47 193.7 295 45.4
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 4.4e-47 192.6 297 44.1
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 7.4e-47 191.8 295 47.8
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 4.8e-46 189.1 300 44.3
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 6.3e-46 188.7 299 45.8
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 1.4e-45 187.6 299 47.8
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.5e-44 184.1 299 47.8
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 3.4e-44 183.0 298 45.0
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 3.8e-43 179.5 300 43.7
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 1.9e-42 177.2 295 40.7
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 2.5e-42 176.8 296 45.6
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 5.5e-42 175.6 294 42.5
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 2.1e-41 173.7 296 42.6
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 3.6e-41 172.9 294 41.8
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 6.1e-41 172.2 249 49.0
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 6.1e-41 172.2 294 42.2
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 7.9e-41 171.8 295 44.7
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 5.2e-40 169.1 297 40.7
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 2.0e-39 167.2 292 40.8
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 2.6e-39 166.8 247 49.4
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 4.4e-39 166.0 295 44.1
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.7e-38 164.1 295 38.6
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 3.7e-38 162.9 299 41.8
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 1.8e-37 160.6 294 41.5
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 4.5e-36 156.0 302 40.4
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 7.7e-36 155.2 292 41.8
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 2.9e-35 153.3 291 39.5
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 2.9e-35 153.3 295 41.4
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 8.5e-35 151.8 302 40.7
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 1.1e-34 151.4 295 41.4
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 9.4e-34 148.3 294 38.1
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 1.4e-32 144.4 300 38.3
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 1.4e-32 144.4 300 38.3
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 1.5e-31 141.0 279 38.7
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 2.0e-31 140.6 298 38.3
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 2.0e-31 140.6 294 37.1
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 2.0e-31 140.6 294 37.1
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.0e-31 140.6 308 39.3
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 2.0e-28 130.6 315 37.1
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 2.7e-28 130.2 294 37.8
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 1.3e-27 127.9 295 36.9
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 1.3e-27 127.9 295 36.9
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 1.7e-27 127.5 282 36.5
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.9e-26 124.0 305 36.4
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 1.9e-26 124.0 293 38.6
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 5.5e-26 122.5 335 34.0
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 5.5e-26 122.5 285 37.5
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 7.2e-26 122.1 285 37.5
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 1.6e-25 120.9 246 41.1
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 2.1e-25 120.6 246 41.1
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 6.1e-25 119.0 253 37.5
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 1.7e-22 110.9 202 43.1
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.9e-18 97.4 298 37.2
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 6.8e-16 89.0 152 40.1
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 8.8e-16 88.6 363 29.8
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 2.3e-11 73.9 44 84.1
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 2.2e-06 57.4 339 28.9


User provided reference genes

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