Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 0.0e+00 1431.8 729 100.0
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 0.0e+00 1198.3 729 84.1
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1161.7 728 81.0
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1154.4 728 81.2
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 0.0e+00 1148.3 728 79.9
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 0.0e+00 1124.8 729 79.0
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 0.0e+00 1123.6 731 78.5
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1122.1 731 78.5
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 0.0e+00 1121.3 732 79.0
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 0.0e+00 1114.0 730 78.9
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 0.0e+00 1112.4 729 78.1
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 0.0e+00 1111.7 725 78.5
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1111.3 728 77.9
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 0.0e+00 1109.0 732 78.7
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 0.0e+00 1104.7 727 78.5
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 0.0e+00 1104.0 732 77.9
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 0.0e+00 1104.0 732 78.3
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 0.0e+00 1102.0 732 77.2
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1101.7 732 77.9
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 0.0e+00 1101.3 732 77.6
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 0.0e+00 1100.5 731 77.3
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 0.0e+00 1098.6 732 77.9
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1092.8 733 76.9
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 0.0e+00 1092.8 722 77.1
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 0.0e+00 1087.8 732 77.6
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 0.0e+00 1087.8 732 77.3
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 0.0e+00 1085.9 732 76.8
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 0.0e+00 1085.5 774 74.4
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 0.0e+00 1084.3 732 76.9
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 0.0e+00 1083.6 733 77.4
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 0.0e+00 1079.3 722 75.9
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 0.0e+00 1078.5 728 76.5
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 0.0e+00 1078.2 722 76.2
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 0.0e+00 1078.2 730 76.3
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 0.0e+00 1076.6 732 76.6
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 0.0e+00 1075.1 715 77.8
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 5.0e-312 1074.3 776 73.5
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 1.0e-311 1072.8 727 74.8
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 3.5e-311 1071.2 733 76.4
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 1.3e-310 1069.3 729 75.9
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 6.4e-310 1067.0 729 75.0
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 1.9e-309 1065.4 727 76.5
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 2.7e-308 1061.6 729 73.9
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 2.7e-308 1061.6 728 74.9
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 6.0e-308 1060.4 729 74.3
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 1.8e-307 1058.9 729 74.8
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 2.3e-307 1058.5 728 74.3
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 3.0e-307 1058.1 733 74.9
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 8.7e-307 1056.6 732 74.6
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 9.6e-306 1053.1 731 74.6
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 1.8e-304 1048.9 731 72.9
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 1.3e-302 1042.7 728 74.0
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 1.3e-302 1042.7 683 78.8
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 1.7e-302 1042.3 730 73.2
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 4.2e-301 1037.7 728 74.2
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 9.3e-301 1036.6 728 73.5
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 9.3e-301 1036.6 728 73.5
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 6.7e-299 1030.4 756 69.3
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 5.6e-298 1027.3 730 74.4
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 7.4e-298 1026.9 732 73.0
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 5.3e-296 1020.8 732 73.0
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 1.2e-295 1019.6 745 72.1
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 4.5e-295 1017.7 731 72.4
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 5.8e-295 1017.3 838 65.2
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 1.7e-294 1015.8 730 72.3
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 6.5e-294 1013.8 730 72.2
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 1.1e-293 1013.1 728 72.5
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 3.2e-293 1011.5 730 71.9
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 1.1e-290 1003.0 731 70.9
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 7.4e-290 1000.3 731 71.0
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 1.1e-288 996.5 730 71.8
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 1.4e-288 996.1 731 70.6
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 1.8e-288 995.7 731 70.6
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 2.4e-288 995.3 728 71.2
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 4.1e-288 994.6 732 71.0
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 5.3e-288 994.2 731 70.5
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 5.3e-288 994.2 731 70.5
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 6.9e-288 993.8 735 70.6
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 2.6e-287 991.9 728 71.2
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 4.5e-287 991.1 735 70.7
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 1.9e-285 985.7 1237 49.3
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 3.2e-285 984.9 731 70.9
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 2.7e-284 981.9 729 70.5
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 2.2e-281 972.2 733 69.2
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 5.5e-269 931.0 737 65.9
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 1.1e-264 916.8 724 66.9
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 4.2e-261 904.8 727 65.5
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 2.2e-254 882.5 590 77.3
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 4.1e-248 861.7 818 59.8
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 3.3e-237 825.5 605 71.6
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 1.8e-235 819.7 752 58.4
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 5.8e-234 814.7 540 77.0
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 2.6e-226 789.3 761 55.2
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 3.5e-223 778.9 464 83.0
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 9.5e-221 770.8 546 73.3
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 4.0e-219 765.4 554 71.3
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 9.3e-208 727.6 677 56.4
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 1.1e-203 714.1 727 53.6
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 2.1e-199 699.9 421 82.4
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 2.0e-138 497.3 738 40.1
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 2.7e-138 496.9 731 40.8
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 1.8e-131 474.2 741 38.5
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 9.8e-125 451.8 733 43.7
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.4e-123 448.0 733 41.7
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 4.1e-123 446.4 268 84.0
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 4.1e-115 419.9 309 74.8
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 3.1e-110 403.7 700 42.0
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 1.5e-109 401.4 510 45.5
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 3.7e-108 396.7 233 87.1
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 3.0e-97 360.5 473 48.6
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 1.1e-91 342.0 713 35.6
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 3.5e-90 337.0 283 64.0
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 6.9e-86 322.8 223 73.1
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 2.2e-76 291.2 293 56.7
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 4.2e-67 260.4 201 67.7
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 2.3e-65 254.6 167 74.9
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 3.2e-51 207.6 143 74.8
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 3.2e-51 207.6 143 74.8
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 1.5e-40 172.2 101 82.2
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 3.3e-40 171.0 125 72.0
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 3.3e-32 144.4 117 59.8
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.5e-27 129.0 84 70.2
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 6.3e-23 113.6 216 38.0
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 1.5e-16 92.4 152 39.5
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 6.3e-15 87.0 64 67.2
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 1.9e-11 75.5 101 49.5


User provided reference genes

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