Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 2.5e-281 971.5 497 100.0
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 7.7e-206 720.7 491 81.1
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 1.5e-204 716.5 484 81.4
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 5.6e-180 634.8 492 72.6
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 1.9e-159 566.6 491 65.4
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.0e-157 559.3 483 64.6
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 1.5e-156 557.0 491 64.6
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.3e-156 555.4 493 63.9
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 3.6e-155 552.4 491 64.2
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 8.1e-155 551.2 491 63.5
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 8.1e-155 551.2 491 64.2
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 8.1e-155 551.2 463 66.1
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 1.3e-152 543.9 476 65.3
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 4.9e-152 542.0 493 63.1
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 3.2e-151 539.3 497 62.6
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 2.3e-149 533.1 510 61.0
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 8.7e-149 531.2 493 61.5
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 3.3e-148 529.3 492 62.4
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 7.3e-148 528.1 481 62.8
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 9.6e-148 527.7 490 60.6
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 6.2e-147 525.0 491 61.9
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.1e-146 524.2 491 60.7
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 4.0e-146 522.3 507 59.8
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.2e-145 520.8 464 64.2
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.5e-145 520.4 494 60.9
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 2.0e-145 520.0 492 61.6
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 2.0e-145 520.0 491 61.3
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.9e-144 515.4 448 64.5
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 5.4e-143 511.9 492 58.9
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 1.6e-142 510.4 467 62.1
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 1.6e-142 510.4 510 58.4
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 3.3e-140 502.7 492 59.6
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 3.3e-140 502.7 493 59.2
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 4.3e-140 502.3 467 60.0
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 4.3e-140 502.3 491 59.7
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 5.6e-140 501.9 497 57.7
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 9.6e-140 501.1 464 60.3
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 1.3e-139 500.7 481 60.5
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 2.1e-139 500.0 491 59.3
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 2.1e-139 500.0 491 58.9
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 6.2e-139 498.4 463 60.0
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.1e-138 497.7 472 59.7
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.1e-138 497.7 468 60.7
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 1.4e-138 497.3 271 95.6
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 1.9e-135 486.9 484 58.3
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 1.9e-135 486.9 495 54.7
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 2.7e-134 483.0 491 57.2
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 3.5e-134 482.6 484 57.9
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 3.5e-134 482.6 466 58.8
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.3e-133 480.7 470 58.7
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.3e-133 479.9 470 58.7
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 1.5e-132 477.2 510 53.5
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 2.5e-132 476.5 492 56.9
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 4.3e-132 475.7 492 54.5
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 5.6e-132 475.3 490 55.1
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 9.6e-132 474.6 489 56.4
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.1e-131 473.4 508 55.7
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 3.7e-131 472.6 492 55.7
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 4.8e-131 472.2 520 54.4
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 1.1e-130 471.1 418 63.2
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 1.8e-130 470.3 465 59.6
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.8e-130 470.3 485 56.5
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 3.1e-130 469.5 460 59.1
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.1e-130 469.5 504 55.2
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 6.9e-130 468.4 475 59.4
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.5e-129 467.2 468 56.0
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 5.8e-129 465.3 490 56.3
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.3e-128 464.2 490 55.9
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 2.2e-128 463.4 499 55.9
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 3.8e-128 462.6 484 55.6
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 4.9e-128 462.2 492 56.5
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 8.4e-128 461.5 495 54.1
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 1.4e-127 460.7 491 53.8
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 2.5e-127 459.9 492 54.7
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 3.2e-127 459.5 428 60.0
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 9.3e-127 458.0 495 55.6
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.1e-126 456.8 521 50.1
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.8e-125 453.8 450 58.0
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 6.7e-125 451.8 490 53.7
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 1.5e-124 450.7 453 55.6
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 2.5e-124 449.9 432 60.4
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 7.4e-124 448.4 373 65.1
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 9.6e-124 448.0 492 54.5
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 2.1e-123 446.8 487 52.4
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 6.3e-123 445.3 447 56.8
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.4e-122 444.1 488 52.7
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 2.4e-122 443.4 445 55.5
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 3.4e-121 439.5 385 63.6
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 5.9e-121 438.7 461 53.4
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 1.0e-120 438.0 505 53.5
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 2.9e-120 436.4 503 52.9
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 5.0e-120 435.6 472 53.0
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 8.5e-120 434.9 417 60.7
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 1.4e-119 434.1 472 52.8
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.2e-118 431.0 473 53.1
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 4.6e-118 429.1 468 54.3
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 7.9e-118 428.3 497 51.9
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.3e-117 426.8 441 54.2
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 6.7e-117 425.2 442 54.1
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 8.7e-117 424.9 498 52.2
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 1.5e-116 424.1 420 59.0
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 4.3e-116 422.5 496 51.6
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 4.3e-116 422.5 496 51.2
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 7.4e-116 421.8 481 51.4
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 2.2e-115 420.2 465 52.0
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 4.8e-115 419.1 488 52.5
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 2.6e-113 413.3 471 52.9
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 2.6e-113 413.3 471 52.9
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.1e-111 407.9 505 49.7
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 5.5e-111 405.6 466 51.5
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 9.7e-108 394.8 454 51.5
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.2e-107 393.7 547 46.1
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 4.1e-106 389.4 503 47.7
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 9.1e-106 388.3 491 48.5
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 2.6e-105 386.7 454 50.9
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 1.1e-103 381.3 365 59.5
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 5.5e-103 379.0 423 50.4
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 9.4e-103 378.3 444 50.9
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 3.0e-101 373.2 477 48.2
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 2.0e-100 370.5 477 48.0
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 5.7e-100 369.0 438 49.5
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 4.8e-99 365.9 480 44.8
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 9.1e-98 361.7 501 43.1
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 2.6e-97 360.1 463 47.5
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 5.9e-97 359.0 484 47.1
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.1e-95 354.8 401 49.9
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 2.1e-94 350.5 475 44.6
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.5e-92 344.4 447 43.6
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 5.7e-92 342.4 352 54.8
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 5.3e-90 335.9 418 47.1
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.3e-88 331.3 309 61.2
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 7.2e-87 325.5 322 57.5
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 2.8e-83 313.5 461 40.8
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 1.4e-82 311.2 390 49.2
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 3.1e-82 310.1 351 47.9
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 2.7e-81 307.0 442 43.9
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 2.5e-79 300.4 449 42.8
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 7.2e-79 298.9 456 42.8
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 4.7e-78 296.2 450 42.2
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 8.0e-78 295.4 481 41.4
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 2.2e-75 287.3 333 52.6
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 4.9e-75 286.2 404 45.0
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 1.6e-73 281.2 470 40.6
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 5.0e-72 276.2 408 42.2
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 6.6e-72 275.8 408 42.2
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 9.5e-71 271.9 393 41.5
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 3.4e-68 263.5 397 42.6
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 7.5e-68 262.3 514 36.8
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 2.2e-67 260.8 397 41.3
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 1.5e-55 221.5 252 52.8
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 9.2e-50 202.2 135 71.1
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 3.6e-46 190.3 494 35.2
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 1.8e-45 188.0 493 34.9
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.4e-44 183.3 502 30.1
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 1.1e-34 152.1 106 71.7
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.3e-32 145.2 247 38.9
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 2.1e-30 137.9 147 57.1
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 6.9e-29 132.9 198 42.9
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 2.1e-25 121.3 204 41.2
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 2.7e-25 120.9 120 54.2
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 3.5e-25 120.6 84 72.6
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 1.9e-23 114.8 98 55.1
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 4.3e-23 113.6 215 38.1
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 2.4e-21 107.8 94 55.3
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.5e-20 105.1 94 55.3
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 3.4e-20 104.0 101 53.5
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 2.4e-18 97.8 62 82.3
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.2e-17 95.5 156 39.1
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 3.9e-16 90.5 90 54.4
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 5.1e-16 90.1 198 37.4
Atru.chr3.2263 Acer truncatum HOM05D003649 ORTHO05D004498 1.8e-13 81.6 81 59.3
Atru.chr3.2269 Acer truncatum HOM05D003649 ORTHO05D004498 5.3e-13 80.1 81 58.0
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 6.9e-13 79.7 54 63.0
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 6.9e-13 79.7 54 63.0
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 1.2e-12 79.0 116 45.7
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 2.6e-12 77.8 103 43.7
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 3.4e-12 77.4 348 26.4
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.0e-11 75.9 150 36.0
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 3.8e-11 73.9 52 65.4
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 6.5e-11 73.2 195 33.3
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 8.4e-11 72.8 166 33.7
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 5.5e-10 70.1 71 57.7
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 1.6e-09 68.6 63 55.6
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 2.1e-09 68.2 40 80.0
SHI14583 Sapria himalayana HOM05D003649 ORTHO05D004498 1.0e-08 65.9 101 44.6
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 1.6e-06 58.5 83 41.0


User provided reference genes

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