Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 1.4e-137 493.0 259 100.0
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 6.2e-82 308.1 243 75.7
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.1e-70 270.8 243 67.5
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 1.2e-69 267.3 241 66.8
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 1.9e-67 260.0 268 60.8
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 1.1e-65 254.2 241 63.5
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 1.8e-65 253.4 240 64.2
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 2.4e-65 253.1 241 62.7
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 2.4e-65 253.1 241 63.1
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 3.1e-65 252.7 241 62.2
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 4.0e-65 252.3 242 62.8
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 1.2e-64 250.8 242 62.8
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 2.6e-64 249.6 241 62.7
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 5.8e-64 248.4 243 62.6
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.8e-64 248.4 243 62.6
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.8e-64 248.4 243 62.6
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 5.8e-64 248.4 241 61.8
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 5.8e-64 248.4 241 62.7
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 7.6e-64 248.1 233 63.9
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 2.9e-63 246.1 240 63.3
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 4.9e-63 245.4 240 61.7
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 4.9e-63 245.4 240 61.7
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.5e-63 245.0 243 62.1
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 9.3e-62 241.1 241 61.4
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 9.3e-62 241.1 232 62.5
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 1.6e-61 240.4 243 60.5
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 2.1e-61 240.0 270 57.0
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 2.7e-61 239.6 241 61.0
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 3.5e-61 239.2 241 62.2
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 3.9e-60 235.7 235 60.9
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 5.1e-60 235.3 241 60.2
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 5.1e-60 235.3 241 61.0
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 5.1e-60 235.3 241 61.0
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 8.7e-60 234.6 209 66.0
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 8.7e-60 234.6 257 58.4
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 8.7e-60 234.6 257 58.4
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 1.1e-59 234.2 233 61.4
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 2.5e-59 233.0 233 60.5
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 2.5e-59 233.0 233 60.5
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 9.7e-59 231.1 241 58.5
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.3e-58 230.7 208 65.4
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 3.7e-58 229.2 235 59.1
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 6.3e-58 228.4 233 61.4
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 6.3e-58 228.4 240 57.9
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 1.1e-57 227.6 233 59.2
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 1.1e-57 227.6 241 58.9
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 1.8e-57 226.9 241 58.5
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 2.4e-57 226.5 240 57.5
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 5.3e-57 225.3 232 58.6
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 2.6e-56 223.0 232 59.5
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 2.6e-56 223.0 233 58.4
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 2.6e-56 223.0 233 58.4
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 1.7e-55 220.3 232 59.1
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 3.8e-55 219.2 241 55.6
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 2.5e-54 216.5 236 58.1
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 3.2e-54 216.1 235 57.0
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 3.2e-54 216.1 240 56.7
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 4.2e-54 215.7 240 55.0
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 5.5e-54 215.3 232 56.9
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 7.2e-54 214.9 233 55.4
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 7.9e-53 211.5 241 56.0
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 1.4e-52 210.7 236 56.8
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 1.4e-52 210.7 316 46.8
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 1.8e-52 210.3 236 56.4
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 1.8e-52 210.3 236 56.8
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 1.8e-52 210.3 236 56.4
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 2.3e-52 209.9 233 56.2
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 2.3e-52 209.9 240 53.3
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 1.5e-51 207.2 236 56.4
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 9.7e-51 204.5 232 54.7
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 1.3e-50 204.1 241 51.9
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 1.3e-50 204.1 239 54.8
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.7e-50 203.8 233 55.8
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.4e-49 199.9 268 53.0
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 6.9e-49 198.4 238 52.1
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 1.5e-48 197.2 240 52.9
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 6.5e-47 191.8 208 58.2
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 2.7e-45 186.4 233 48.9
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 4.7e-45 185.7 218 53.7
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 7.9e-45 184.9 171 64.3
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 1.0e-44 184.5 184 60.3
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 1.5e-43 180.6 240 47.9
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 7.4e-43 178.3 232 52.2
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 1.7e-42 177.2 159 62.3
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 3.1e-41 172.9 275 44.0
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 4.1e-41 172.6 209 51.7
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-41 172.6 184 57.6
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 4.5e-40 169.1 240 45.0
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 5.9e-40 168.7 217 51.2
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 1.7e-39 167.2 145 64.8
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 2.5e-38 163.3 218 51.4
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 9.4e-38 161.4 246 45.5
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 4.7e-37 159.1 177 50.3
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 3.0e-36 156.4 212 48.1
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 1.1e-35 154.5 127 66.1
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 3.3e-35 152.9 203 51.7
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.7e-34 150.6 174 50.0
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 2.8e-34 149.8 144 61.1
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 1.2e-32 144.4 203 49.3
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 3.5e-32 142.9 340 37.1
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 6.5e-31 138.7 145 57.9
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 8.5e-31 138.3 135 59.3
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 6.3e-26 122.1 235 42.1
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.2e-24 117.9 100 69.0
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 2.7e-24 116.7 202 43.1
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.8e-23 112.8 113 58.4
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.9e-22 110.5 118 54.2
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 4.2e-22 109.4 234 34.2
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 2.3e-20 103.6 102 61.8
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.0e-20 102.8 123 55.3
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 2.0e-19 100.5 189 45.0
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 9.1e-17 91.7 100 58.0
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 3.5e-16 89.7 159 39.0
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 5.5e-14 82.4 219 31.5
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 4.7e-13 79.3 62 66.1
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 4.7e-13 79.3 113 48.7
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 1.8e-12 77.4 75 62.7
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.3e-12 77.0 90 57.8
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 4.0e-12 76.3 57 75.4
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 6.8e-12 75.5 50 84.0
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 4.4e-11 72.8 75 58.7
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 5.7e-11 72.4 74 62.2
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 3.7e-10 69.7 45 82.2
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 6.3e-10 68.9 74 58.1
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 8.3e-10 68.6 243 26.3
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 1.1e-09 68.2 45 80.0
MELO3C034937.2 Cucumis melo HOM05D005062 ORTHO05D006410 3.2e-09 66.6 52 69.2
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 4.1e-09 66.2 56 58.9
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.2e-08 64.7 216 28.2
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.0e-08 63.9 217 29.5
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-08 63.2 110 39.1
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 1.0e-07 61.6 44 70.5
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 1.3e-07 61.2 240 29.2
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 4.3e-06 56.2 37 81.1


User provided reference genes

Program Settings