Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 6.0e-87 325.9 169 100.0
Cfa004946 Carpinus fangiana HOM05D007083 ORTHO05D008801 2.1e-79 300.8 162 96.9
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 1.6e-68 264.6 168 81.5
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 3.8e-65 253.4 168 79.8
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 1.5e-58 231.5 168 67.3
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 1.0e-57 228.8 168 64.9
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 2.2e-57 227.6 168 65.5
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 6.5e-57 226.1 168 64.9
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.1e-56 225.3 167 65.3
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 2.5e-56 224.2 167 64.1
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.0e-54 218.8 166 63.3
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 4.4e-53 213.4 168 64.3
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 2.8e-52 210.7 169 61.5
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 4.8e-52 209.9 168 64.3
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 4.8e-52 209.9 168 64.3
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 1.4e-51 208.4 169 61.5
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 5.3e-51 206.5 168 65.5
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 1.2e-50 205.3 166 62.0
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 1.5e-50 204.9 169 58.6
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 3.4e-50 203.8 168 67.3
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 4.5e-50 203.4 168 59.5
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 7.7e-50 202.6 168 58.3
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 6.5e-49 199.5 169 62.1
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 1.1e-48 198.7 168 59.5
Atru.chr5.2875 Acer truncatum HOM05D007083 ORTHO05D008801 1.6e-47 194.9 147 65.3
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 1.6e-47 194.9 168 58.3
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 6.1e-47 193.0 168 54.8
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 2.0e-45 188.0 168 52.4
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 3.3e-45 187.2 169 58.0
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 1.3e-44 185.3 170 56.5
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 2.8e-44 184.1 173 57.2
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 6.3e-44 183.0 170 57.1
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 8.2e-44 182.6 168 53.6
TWI31G0787 Tripterygium wilfordii HOM05D007083 ORTHO05D008801 8.2e-44 182.6 152 59.9
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 1.4e-43 181.8 171 53.2
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 1.8e-43 181.4 168 54.8
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 1.8e-43 181.4 168 56.5
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 4.1e-43 180.3 158 55.7
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 1.2e-42 178.7 158 55.7
Atru.chr13.1400 Acer truncatum HOM05D007083 ORTHO05D008801 3.5e-42 177.2 152 61.2
Potri.009G109001 Populus trichocarpa HOM05D007083 ORTHO05D008801 5.9e-42 176.4 161 54.0
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 2.2e-41 174.5 154 56.5
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 2.9e-41 174.1 171 50.9
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 2.9e-41 174.1 168 58.3
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 2.9e-41 174.1 165 54.5
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 1.5e-40 171.8 168 51.8
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 1.9e-40 171.4 169 50.9
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 1.9e-40 171.4 142 57.0
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 2.5e-40 171.0 170 54.7
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 3.2e-40 170.6 168 49.4
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 4.2e-40 170.2 168 50.6
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 4.2e-40 170.2 168 50.6
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 4.2e-40 170.2 168 50.6
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 5.5e-40 169.9 168 51.2
Sed0019239 Sechium edule HOM05D007083 ORTHO05D008801 5.5e-40 169.9 148 58.1
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 5.5e-40 169.9 168 53.0
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 9.4e-40 169.1 168 52.4
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 1.2e-39 168.7 170 49.4
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 2.7e-39 167.5 174 53.4
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 4.7e-39 166.8 168 51.2
CsaV3_7G010110 Cucumis sativus L. HOM05D007083 ORTHO05D008801 1.4e-38 165.2 150 58.7
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 1.8e-38 164.9 168 53.6
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 1.8e-38 164.9 168 52.4
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 5.2e-38 163.3 167 52.7
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 5.2e-38 163.3 171 48.5
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 6.7e-38 162.9 168 51.8
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 6.7e-38 162.9 168 51.8
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 8.8e-38 162.5 150 57.3
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 3.3e-37 160.6 168 51.8
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 7.5e-37 159.5 171 46.2
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 3.7e-36 157.1 170 51.2
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 6.3e-36 156.4 168 50.6
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 6.3e-36 156.4 168 50.0
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 1.1e-35 155.6 168 48.8
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 2.4e-35 154.5 168 50.6
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 3.1e-35 154.1 168 48.8
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 2.0e-34 151.4 168 48.2
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 1.0e-33 149.1 171 43.9
ClCG02G005520 Citrullus lanatus HOM05D007083 ORTHO05D008801 1.3e-33 148.7 139 55.4
ECA236G1626 Erigeron canadensis HOM05D007083 ORTHO05D008801 1.7e-33 148.3 168 47.6
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 1.1e-32 145.6 171 50.3
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 2.5e-32 144.4 168 47.6
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 2.5e-32 144.4 168 48.2
COL.COLO4_17774 Corchorus olitorius HOM05D007083 ORTHO05D008801 5.2e-30 136.7 147 50.3
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 4.8e-28 130.2 152 48.7
ATR0598G052 Amborella trichopoda HOM05D007083 ORTHO05D008801 2.9e-25 120.9 170 38.2
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 4.2e-24 117.1 154 44.2
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 1.0e-22 112.5 171 39.8
PSO339G4029 Papaver somniferum HOM05D007083 ORTHO05D008801 1.5e-21 108.6 159 40.3
PSO384G4964 Papaver somniferum HOM05D007083 ORTHO05D008801 1.2e-18 99.0 158 38.0
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 4.3e-16 90.5 69 59.4
Migut.N01212 Erythranthe guttata HOM05D007083 ORTHO05D008801 5.6e-16 90.1 151 39.1
TPR.G10240 Trifolium pratense HOM05D007083 ORTHO05D008801 6.8e-14 83.2 71 52.1
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 8.9e-14 82.8 160 32.5
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.3e-09 68.2 172 27.9
Rhsim01G0212700 Rhododendron simsii HOM05D006931 ORTHO05D008782 5.0e-09 67.0 170 30.6
Carub.0003s2940 Capsella rubella HOM05D007083 ORTHO05D008801 6.6e-09 66.6 49 63.3
Atru.BG.59.p Acer truncatum HOM05D007083 ORTHO05D008801 1.1e-08 65.9 102 39.2
Psat7g208080 Pisum sativum HOM05D007083 ORTHO05D008801 5.6e-08 63.5 52 51.9
Rhsim06G0175400 Rhododendron simsii HOM05D006931 ORTHO05D008782 5.6e-08 63.5 168 28.6
CANSAT56G2257 Cannabis sativa HOM05D002890 ORTHO05D009847 7.3e-08 63.2 167 25.7
Lj8P135T27 Lonicera japonica HOM05D006931 ORTHO05D008782 2.8e-07 61.2 165 27.3
Gohir.A04G115700 Gossypium hirsutum HOM05D007083 ORTHO05D008801 4.7e-07 60.5 42 64.3
MSTRG.10694 Avicennia marina HOM05D006931 ORTHO05D008782 6.2e-07 60.1 171 28.7
Haze_02434 Corylus avellana HOM05D007675 ORTHO05D009699 8.0e-07 59.7 173 27.7
SalBow3G0197 Salvia bowleyana HOM05D007675 ORTHO05D009699 8.0e-07 59.7 172 29.1
TAR629G3292 Trochodendron aralioides HOM05D006931 ORTHO05D008782 1.1e-06 59.3 168 28.6
Cc09_g01660 Coffea canephora HOM05D002890 ORTHO05D009847 1.4e-06 58.9 167 24.6
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 2.3e-06 58.2 168 28.6
Ciclev10014539m.g Citrus clementina HOM05D002890 ORTHO05D009847 3.1e-06 57.8 166 25.9
Lj1C286T3 Lonicera japonica HOM05D007455 ORTHO05D009431 3.1e-06 57.8 171 28.1
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 3.1e-06 57.8 166 24.1
Eucgr.G01771 Eucalyptus grandis HOM05D006931 ORTHO05D008782 5.2e-06 57.0 162 28.4
Prupe.2G064100 Prunus persica HOM05D002890 ORTHO05D009847 5.2e-06 57.0 167 24.6
RcHm_v2.0_Chr6g0260761 Rosa chinensis HOM05D007083 ORTHO05D008801 5.2e-06 57.0 41 65.9
vmacro12097 Vaccinium macrocarpon HOM05D006931 ORTHO05D008782 6.8e-06 56.6 168 26.2
PGR042G0565 Punica granatum HOM05D002890 ORTHO05D009847 8.9e-06 56.2 171 28.7
SalBow1G4479 Salvia bowleyana HOM05D006931 ORTHO05D008782 8.9e-06 56.2 167 26.3


User provided reference genes

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