Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02444 Corylus avellana HOM05D005605 ORTHO05D007615 7.7e-222 773.5 382 100.0
Haze_02436 Corylus avellana HOM05D005605 ORTHO05D007615 4.6e-142 508.4 359 76.3
Haze_02391 Corylus avellana HOM05D005605 ORTHO05D007615 1.8e-133 479.9 269 89.6
Haze_02388 Corylus avellana HOM05D005605 ORTHO05D007615 6.5e-128 461.5 267 88.8
Cfa004997 Carpinus fangiana HOM05D005605 ORTHO05D007615 6.1e-126 454.9 266 88.7
CiPaw.05G064700 Carya illinoinensis HOM05D005605 ORTHO05D007615 8.0e-110 401.4 269 76.6
QL11p043893 Quercus lobata HOM05D005605 ORTHO05D007615 1.7e-107 393.7 272 75.4
Cfa005000 Carpinus fangiana HOM05D005605 ORTHO05D007615 1.8e-101 373.6 205 92.2
Cpa.g.sc62.154 Carica papaya HOM05D005605 ORTHO05D007615 4.4e-100 369.0 365 56.7
Cfa004998 Carpinus fangiana HOM05D005605 ORTHO05D007615 5.0e-96 355.5 253 73.9
Phvul.011G045100 Phaseolus vulgaris HOM05D005605 ORTHO05D007615 8.5e-96 354.8 281 63.7
CsaV3_7G023590 Cucumis sativus L. HOM05D005605 ORTHO05D007615 2.1e-94 350.1 285 62.1
TPR.G19396 Trifolium pratense HOM05D005605 ORTHO05D007615 3.6e-94 349.4 265 65.7
Ca_20877_v3 Cicer arietinum L. HOM05D005605 ORTHO05D007615 6.1e-94 348.6 298 60.1
ClCG02G005000 Citrullus lanatus HOM05D005605 ORTHO05D007615 6.1e-94 348.6 285 62.8
Medtr4g070060 Medicago truncatula HOM05D005605 ORTHO05D007615 1.0e-93 347.8 298 60.7
CANSAT01G2366 Cannabis sativa HOM05D005605 ORTHO05D007615 6.8e-93 345.1 304 58.6
CSS0012215 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 8.8e-93 344.7 266 64.7
CSS0037419 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 8.8e-93 344.7 266 64.7
Glyma.12G043100 Glycine max HOM05D005605 ORTHO05D007615 8.8e-93 344.7 275 63.3
VMungo1127G2130 Vigna mungo HOM05D005605 ORTHO05D007615 8.8e-93 344.7 284 62.3
Psat7g141400 Pisum sativum HOM05D005605 ORTHO05D007615 2.0e-92 343.6 299 59.2
arahy.Tifrunner.gnm1.ann1.XL89DC Arachis hypogaea HOM05D005605 ORTHO05D007615 1.3e-91 340.9 274 64.2
MELO3C012521.2 Cucumis melo HOM05D005605 ORTHO05D007615 1.3e-91 340.9 285 61.1
Glyma.11G117700 Glycine max HOM05D005605 ORTHO05D007615 2.2e-91 340.1 265 63.4
THA.LOC104824826 Tarenaya hassleriana HOM05D005605 ORTHO05D007615 8.3e-91 338.2 270 62.6
Lj3g0011747 Lotus japonicus HOM05D005605 ORTHO05D007615 1.1e-90 337.8 299 60.2
Thhalv10000085m.g Eutrema salsugineum HOM05D005605 ORTHO05D007615 3.1e-90 336.3 266 62.4
Hma1.2p1_0066F.1_g036390 Hydrangea macrophylla HOM05D005605 ORTHO05D007615 4.1e-90 335.9 265 63.0
Sp4g00860 Schrenkiella parvula HOM05D005605 ORTHO05D007615 7.0e-90 335.1 270 61.1
AT2G21710 Arabidopsis thaliana HOM05D005605 ORTHO05D007615 9.1e-90 334.7 268 60.8
BcaC07g41121 Brassica carinata HOM05D005605 ORTHO05D007615 9.1e-90 334.7 270 60.4
BolC8t51688H Brassica oleracea HOM05D005605 ORTHO05D007615 9.1e-90 334.7 270 60.4
Eucgr.I01271 Eucalyptus grandis HOM05D005605 ORTHO05D007615 9.1e-90 334.7 268 64.2
TWI31G1015 Tripterygium wilfordii HOM05D005605 ORTHO05D007615 9.1e-90 334.7 268 62.3
A09p58000 Brassica napus HOM05D005605 ORTHO05D007615 1.2e-89 334.3 268 60.4
BraA09t41190Z Brassica rapa HOM05D005605 ORTHO05D007615 1.2e-89 334.3 268 60.4
C08p41210 Brassica napus HOM05D005605 ORTHO05D007615 2.7e-89 333.2 272 60.7
AL4G10940 Arabidopsis lyrata HOM05D005605 ORTHO05D007615 5.9e-89 332.0 266 61.3
Carub.0004s0075 Capsella rubella HOM05D005605 ORTHO05D007615 5.9e-89 332.0 271 60.1
Gohir.D13G032600 Gossypium hirsutum HOM05D005605 ORTHO05D007615 1.7e-88 330.5 268 62.7
Gorai.013G037000 Gossypium raimondii HOM05D005605 ORTHO05D007615 1.7e-88 330.5 268 62.7
Aa31LG7G14820 Aethionema arabicum HOM05D005605 ORTHO05D007615 1.1e-87 327.8 287 57.8
Gohir.A13G034200 Gossypium hirsutum HOM05D005605 ORTHO05D007615 2.5e-87 326.6 267 62.2
Lsat_1_v5_gn_1_111380 Lactuca sativa HOM05D005605 ORTHO05D007615 2.5e-87 326.6 281 59.4
arahy.Tifrunner.gnm1.ann1.IZ1QNN Arachis hypogaea HOM05D005605 ORTHO05D007615 4.2e-87 325.9 280 61.4
BcaB08g35002 Brassica carinata HOM05D005605 ORTHO05D007615 4.2e-87 325.9 280 56.8
Sed0006971 Sechium edule HOM05D005605 ORTHO05D007615 2.8e-86 323.2 299 57.5
HanXRQChr11g0343841 Helianthus annuus HOM05D005605 ORTHO05D007615 6.8e-85 318.5 267 60.3
FvH4_2g08810 Fragaria vesca HOM05D005605 ORTHO05D007615 1.2e-84 317.8 277 63.2
Prupe.8G096600 Prunus persica HOM05D005605 ORTHO05D007615 3.4e-84 316.2 269 63.6
Rhsim11G0177400 Rhododendron simsii HOM05D005605 ORTHO05D007615 3.4e-84 316.2 313 53.0
RcHm_v2.0_Chr6g0264281 Rosa chinensis HOM05D005605 ORTHO05D007615 3.4e-84 316.2 276 62.7
TAR628G1411 Trochodendron aralioides HOM05D005605 ORTHO05D007615 3.4e-84 316.2 268 62.3
MD05G1066000 Malus domestica HOM05D005605 ORTHO05D007615 1.7e-83 313.9 266 63.5
FAN15G0883 Fragaria x ananassa HOM05D005605 ORTHO05D007615 2.9e-83 313.2 279 62.0
FAN24G2665 Fragaria x ananassa HOM05D005605 ORTHO05D007615 3.7e-83 312.8 279 62.4
Sabra09G0089200 Salix brachista HOM05D005605 ORTHO05D007615 8.3e-83 311.6 308 56.2
FAN20G2643 Fragaria x ananassa HOM05D005605 ORTHO05D007615 1.1e-82 311.2 277 61.7
Oeu015995.1 Olea europaea HOM05D005605 ORTHO05D007615 7.0e-82 308.5 275 56.7
CSS0010527 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 2.0e-81 307.0 304 56.2
Potri.009G116200 Populus trichocarpa HOM05D005605 ORTHO05D007615 2.7e-81 306.6 272 60.3
CSS0044100 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 5.9e-81 305.4 304 55.9
Solyc01g109630.4 Solanum lycopersicum HOM05D005605 ORTHO05D007615 5.9e-81 305.4 266 56.8
PGSC0003DMG400000727 Solanum tuberosum HOM05D005605 ORTHO05D007615 1.0e-80 304.7 266 56.8
Sopen01g051820 Solanum pennellii HOM05D005605 ORTHO05D007615 1.1e-79 301.2 266 56.8
Peaxi162Scf00016g00735 Petunia axillaris HOM05D005605 ORTHO05D007615 1.2e-78 297.7 268 55.2
PGR142G2567 Punica granatum HOM05D005605 ORTHO05D007615 2.1e-78 297.0 266 59.0
Aqoxy6G01115 Aquilegia oxysepala HOM05D005605 ORTHO05D007615 3.6e-78 296.2 263 58.6
DCAR_001580 Daucus carota HOM05D005605 ORTHO05D007615 3.6e-78 296.2 280 56.4
CAN.G1412.8 Capsicum annuum HOM05D005605 ORTHO05D007615 1.2e-76 291.2 266 56.0
Lj5C196G6 Lonicera japonica HOM05D005605 ORTHO05D007615 2.0e-76 290.4 276 55.4
ECA248G2826 Erigeron canadensis HOM05D005605 ORTHO05D007615 2.6e-76 290.0 260 56.9
Migut.B00234 Erythranthe guttata HOM05D005605 ORTHO05D007615 5.8e-76 288.9 273 52.7
GSVIVG01031970001 Vitis vinifera HOM05D005605 ORTHO05D007615 2.9e-75 286.6 207 68.6
Ah.01g006280 Amaranthus hybridus HOM05D005605 ORTHO05D007615 1.6e-73 280.8 309 47.9
Manes.17G101300 Manihot esculenta HOM05D005605 ORTHO05D007615 1.6e-73 280.8 267 57.3
Cc02_g17560 Coffea canephora HOM05D005605 ORTHO05D007615 2.7e-73 280.0 209 63.2
Hund00267 Selenicereus undatus HOM05D005605 ORTHO05D007615 4.6e-73 279.3 268 56.0
COL.COLO4_25933 Corchorus olitorius HOM05D005605 ORTHO05D007615 6.0e-73 278.9 210 62.9
Nitab4.5_0004172g0020 Nicotiana tabacum HOM05D005605 ORTHO05D007615 1.3e-72 277.7 258 55.0
Rhsim07G0028500 Rhododendron simsii HOM05D005605 ORTHO05D007615 1.1e-71 274.6 355 44.8
vmacro02103 Vaccinium macrocarpon HOM05D005605 ORTHO05D007615 1.1e-71 274.6 261 55.9
Duzib052G1004 Durio zibethinus HOM05D005605 ORTHO05D007615 8.1e-70 268.5 256 55.9
unitig_0.g65 Utricularia gibba HOM05D005605 ORTHO05D007615 1.9e-66 257.3 273 49.1
MBI02_g03744_MAGBIO Magnolia biondii HOM05D005605 ORTHO05D007615 4.6e-65 252.7 276 51.1
Lalb_Chr03g0025671 Lupinus albus HOM05D005605 ORTHO05D007615 5.1e-64 249.2 217 62.2
MSTRG.20083 Avicennia marina HOM05D005605 ORTHO05D007615 1.9e-63 247.3 237 52.3
PSO541G1874 Papaver somniferum HOM05D005605 ORTHO05D007615 8.1e-62 241.9 272 48.2
PSO675G3023 Papaver somniferum HOM05D005605 ORTHO05D007615 1.4e-61 241.1 272 47.8
Sc18g0004450 Simmondsia chinensis HOM05D005605 ORTHO05D007615 6.8e-61 238.8 252 50.0
Haze_02447 Corylus avellana HOM05D005605 ORTHO05D007615 4.4e-60 236.1 172 72.1
AUR62011322 Chenopodium quinoa HOM05D005605 ORTHO05D007615 8.4e-59 231.9 205 53.7
Nitab4.5_0000308g0140 Nicotiana tabacum HOM05D005605 ORTHO05D007615 8.4e-59 231.9 260 47.7
Ciclev10028120m.g Citrus clementina HOM05D005605 ORTHO05D007615 2.4e-58 230.3 192 62.5
ATR0772G053 Amborella trichopoda HOM05D005605 ORTHO05D007615 6.0e-57 225.7 254 45.7
Atru.chr5.3019 Acer truncatum HOM05D005605 ORTHO05D007615 1.6e-54 217.6 205 59.0
Haze_02443 Corylus avellana HOM05D005605 ORTHO05D007615 3.1e-53 213.4 172 65.1
Thecc.02G085000 Theobroma cacao HOM05D005605 ORTHO05D007615 1.2e-52 211.5 210 54.8
AUR62016738 Chenopodium quinoa HOM05D005605 ORTHO05D007615 7.1e-50 202.2 172 54.1
Nn5g29612 Nelumbo nucifera HOM05D005605 ORTHO05D007615 8.7e-48 195.3 192 54.2
EL10Ac9g21723 Beta vulgaris HOM05D005605 ORTHO05D007615 1.3e-46 191.4 207 50.7
Dinv23519 Davidia involucrata HOM05D005605 ORTHO05D007615 1.6e-46 191.0 271 42.4
Actinidia00525 Actinidia chinensis HOM05D005605 ORTHO05D007615 1.8e-45 187.6 149 61.7
CARHR112700 Cardamine hirsuta HOM05D005605 ORTHO05D007615 2.9e-43 180.3 121 64.5
SGA_v2.0_scaffold58G20533 Striga asiatica HOM05D005605 ORTHO05D007615 4.9e-43 179.5 229 45.9
BcaC07g41120 Brassica carinata HOM05D005605 ORTHO05D007615 1.3e-40 171.4 111 66.7
CDE04G2564 Ceratophyllum demersum HOM05D005605 ORTHO05D007615 9.6e-39 165.2 226 44.2
SEGI_23691 Sequoiadendron giganteum HOM05D005605 ORTHO05D007615 1.0e-32 145.2 276 35.1
Cfa004994 Carpinus fangiana HOM05D005605 ORTHO05D007615 3.0e-32 143.7 157 58.0
Zm00001eb299540 Zea mays HOM05D005605 ORTHO05D007615 2.5e-31 140.6 258 34.9
Os07g0134700 Oryza sativa ssp. japonica HOM05D005605 ORTHO05D007615 4.8e-30 136.3 264 32.2
SalBow6G1488 Salvia bowleyana HOM05D002700 ORTHO05D003228 8.7e-24 115.5 197 34.5
HPP92_026666 Vanilla planifolia HOM05D005605 ORTHO05D007615 3.3e-23 113.6 195 38.5
CDE04G1094 Ceratophyllum demersum HOM05D005605 ORTHO05D007615 4.3e-23 113.2 129 45.0
Mapoly0073s0074 Marchantia polymorpha HOM05D005605 ORTHO05D007615 5.7e-23 112.8 349 25.5
CDE04G2942 Ceratophyllum demersum HOM05D005605 ORTHO05D007615 1.4e-21 108.2 66 71.2
Dinv07689 Davidia involucrata HOM05D005605 ORTHO05D007615 3.1e-21 107.1 97 51.5
AagrBONN_evm.TU.Sc2ySwM_228.1452 Anthoceros agrestis HOM05D005605 ORTHO05D007615 4.2e-18 96.7 185 31.9
MBI02_g24399_MAGBIO Magnolia biondii HOM05D005605 ORTHO05D007615 2.7e-17 94.0 86 53.5
Hma1.2p1_0066F.1_g036400 Hydrangea macrophylla HOM05D005605 ORTHO05D007615 1.1e-15 88.6 48 79.2
SMO358G0083 Selaginella moellendorffii HOM05D005605 ORTHO05D007615 4.8e-14 83.2 197 27.4
HPP92_026667 Vanilla planifolia HOM05D005605 ORTHO05D007615 1.0e-08 65.5 38 73.7
FvH4_6g36600 Fragaria vesca HOM05D005956 ORTHO05D007197 1.8e-08 64.7 130 29.2
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 3.0e-08 63.9 118 32.2
FAN02G1317 Fragaria x ananassa HOM05D005956 ORTHO05D007197 5.1e-08 63.2 99 33.3
FAN14G1696 Fragaria x ananassa HOM05D005956 ORTHO05D007197 6.7e-08 62.8 118 31.4
RcHm_v2.0_Chr2g0149071 Rosa chinensis HOM05D005956 ORTHO05D007197 2.5e-07 60.8 140 27.9
Prupe.3G025200 Prunus persica HOM05D005956 ORTHO05D007197 1.7e-06 58.2 99 33.3
MD17G1161200 Malus domestica HOM05D005956 ORTHO05D007197 4.8e-06 56.6 99 28.3
Ciclev10013933m.g Citrus clementina HOM05D005956 ORTHO05D007197 6.3e-06 56.2 142 26.1


User provided reference genes

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