Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02443 Corylus avellana HOM05D005605 ORTHO05D007615 1.4e-265 919.1 484 100.0
Haze_02447 Corylus avellana HOM05D005605 ORTHO05D007615 3.8e-109 399.4 343 67.9
Haze_02436 Corylus avellana HOM05D005605 ORTHO05D007615 8.1e-75 285.4 330 53.6
Cfa004997 Carpinus fangiana HOM05D005605 ORTHO05D007615 5.4e-55 219.5 344 45.1
Haze_02444 Corylus avellana HOM05D005605 ORTHO05D007615 1.5e-52 211.5 172 65.1
Haze_02391 Corylus avellana HOM05D005605 ORTHO05D007615 3.8e-48 196.8 180 59.4
Haze_02388 Corylus avellana HOM05D005605 ORTHO05D007615 1.4e-47 194.9 177 59.3
Cfa005000 Carpinus fangiana HOM05D005605 ORTHO05D007615 1.3e-45 188.3 170 60.0
CiPaw.05G064700 Carya illinoinensis HOM05D005605 ORTHO05D007615 6.7e-37 159.5 170 50.0
QL11p043893 Quercus lobata HOM05D005605 ORTHO05D007615 6.7e-37 159.5 173 49.7
arahy.Tifrunner.gnm1.ann1.XL89DC Arachis hypogaea HOM05D005605 ORTHO05D007615 1.5e-33 148.3 174 46.6
Cfa004998 Carpinus fangiana HOM05D005605 ORTHO05D007615 3.4e-33 147.1 154 53.9
CSS0012215 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 7.6e-33 146.0 173 43.9
CSS0037419 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 7.6e-33 146.0 173 43.9
FvH4_2g08810 Fragaria vesca HOM05D005605 ORTHO05D007615 1.0e-32 145.6 170 48.2
Phvul.011G045100 Phaseolus vulgaris HOM05D005605 ORTHO05D007615 1.3e-32 145.2 170 43.5
arahy.Tifrunner.gnm1.ann1.IZ1QNN Arachis hypogaea HOM05D005605 ORTHO05D007615 1.7e-32 144.8 97 68.0
Cc02_g17560 Coffea canephora HOM05D005605 ORTHO05D007615 2.2e-32 144.4 175 41.1
MD05G1066000 Malus domestica HOM05D005605 ORTHO05D007615 2.2e-32 144.4 170 45.9
Prupe.8G096600 Prunus persica HOM05D005605 ORTHO05D007615 2.2e-32 144.4 170 46.5
FAN15G0883 Fragaria x ananassa HOM05D005605 ORTHO05D007615 2.9e-32 144.1 172 47.7
vmacro02103 Vaccinium macrocarpon HOM05D005605 ORTHO05D007615 2.9e-32 144.1 110 60.0
VMungo1127G2130 Vigna mungo HOM05D005605 ORTHO05D007615 6.5e-32 142.9 94 66.0
A09p58000 Brassica napus HOM05D005605 ORTHO05D007615 8.4e-32 142.5 170 44.1
CANSAT01G2366 Cannabis sativa HOM05D005605 ORTHO05D007615 8.4e-32 142.5 177 40.1
Oeu015995.1 Olea europaea HOM05D005605 ORTHO05D007615 8.4e-32 142.5 180 40.0
RcHm_v2.0_Chr6g0264281 Rosa chinensis HOM05D005605 ORTHO05D007615 8.4e-32 142.5 170 46.5
Cfa004994 Carpinus fangiana HOM05D005605 ORTHO05D007615 1.1e-31 142.1 124 62.1
Eucgr.I01271 Eucalyptus grandis HOM05D005605 ORTHO05D007615 1.1e-31 142.1 167 44.9
FAN20G2643 Fragaria x ananassa HOM05D005605 ORTHO05D007615 1.9e-31 141.4 170 47.6
BraA09t41190Z Brassica rapa HOM05D005605 ORTHO05D007615 2.5e-31 141.0 170 43.5
Gohir.D13G032600 Gossypium hirsutum HOM05D005605 ORTHO05D007615 2.5e-31 141.0 173 43.9
Gorai.013G037000 Gossypium raimondii HOM05D005605 ORTHO05D007615 2.5e-31 141.0 173 43.9
FAN24G2665 Fragaria x ananassa HOM05D005605 ORTHO05D007615 3.2e-31 140.6 172 47.1
PGR142G2567 Punica granatum HOM05D005605 ORTHO05D007615 4.2e-31 140.2 167 43.1
BcaC07g41121 Brassica carinata HOM05D005605 ORTHO05D007615 5.5e-31 139.8 172 42.4
BolC8t51688H Brassica oleracea HOM05D005605 ORTHO05D007615 5.5e-31 139.8 172 42.4
C08p41210 Brassica napus HOM05D005605 ORTHO05D007615 7.1e-31 139.4 172 42.4
AL4G10940 Arabidopsis lyrata HOM05D005605 ORTHO05D007615 1.2e-30 138.7 170 42.9
Thhalv10000085m.g Eutrema salsugineum HOM05D005605 ORTHO05D007615 1.2e-30 138.7 167 42.5
Gohir.A13G034200 Gossypium hirsutum HOM05D005605 ORTHO05D007615 1.2e-30 138.7 172 43.6
AT2G21710 Arabidopsis thaliana HOM05D005605 ORTHO05D007615 1.6e-30 138.3 172 42.4
Rhsim11G0177400 Rhododendron simsii HOM05D005605 ORTHO05D007615 2.7e-30 137.5 109 58.7
THA.LOC104824826 Tarenaya hassleriana HOM05D005605 ORTHO05D007615 2.7e-30 137.5 169 41.4
TAR628G1411 Trochodendron aralioides HOM05D005605 ORTHO05D007615 2.7e-30 137.5 173 43.9
Glyma.12G043100 Glycine max HOM05D005605 ORTHO05D007615 3.5e-30 137.1 170 42.4
GSVIVG01031970001 Vitis vinifera HOM05D005605 ORTHO05D007615 3.5e-30 137.1 173 43.4
Nitab4.5_0000308g0140 Nicotiana tabacum HOM05D005605 ORTHO05D007615 4.6e-30 136.7 126 49.2
Potri.009G116200 Populus trichocarpa HOM05D005605 ORTHO05D007615 4.6e-30 136.7 88 71.6
Aa31LG7G14820 Aethionema arabicum HOM05D005605 ORTHO05D007615 6.1e-30 136.3 169 40.2
BcaB08g35002 Brassica carinata HOM05D005605 ORTHO05D007615 7.9e-30 136.0 173 40.5
Sp4g00860 Schrenkiella parvula HOM05D005605 ORTHO05D007615 7.9e-30 136.0 172 41.9
Lj5C196G6 Lonicera japonica HOM05D005605 ORTHO05D007615 1.0e-29 135.6 170 41.2
Medtr4g070060 Medicago truncatula HOM05D005605 ORTHO05D007615 1.0e-29 135.6 170 42.4
BcaC07g41120 Brassica carinata HOM05D005605 ORTHO05D007615 1.3e-29 135.2 90 62.2
Sabra09G0089200 Salix brachista HOM05D005605 ORTHO05D007615 1.3e-29 135.2 92 69.6
TWI31G1015 Tripterygium wilfordii HOM05D005605 ORTHO05D007615 1.3e-29 135.2 170 41.2
ClCG02G005000 Citrullus lanatus HOM05D005605 ORTHO05D007615 1.8e-29 134.8 89 66.3
MELO3C012521.2 Cucumis melo HOM05D005605 ORTHO05D007615 1.8e-29 134.8 174 41.4
Lj3g0011747 Lotus japonicus HOM05D005605 ORTHO05D007615 1.8e-29 134.8 167 40.7
Nitab4.5_0004172g0020 Nicotiana tabacum HOM05D005605 ORTHO05D007615 1.8e-29 134.8 153 41.8
Carub.0004s0075 Capsella rubella HOM05D005605 ORTHO05D007615 2.3e-29 134.4 167 42.5
Ca_20877_v3 Cicer arietinum L. HOM05D005605 ORTHO05D007615 2.3e-29 134.4 173 39.9
Glyma.11G117700 Glycine max HOM05D005605 ORTHO05D007615 2.3e-29 134.4 173 41.6
Aqoxy6G01115 Aquilegia oxysepala HOM05D005605 ORTHO05D007615 3.9e-29 133.7 173 41.0
TPR.G19396 Trifolium pratense HOM05D005605 ORTHO05D007615 5.1e-29 133.3 167 41.3
Psat7g141400 Pisum sativum HOM05D005605 ORTHO05D007615 6.7e-29 132.9 173 41.0
CsaV3_7G023590 Cucumis sativus L. HOM05D005605 ORTHO05D007615 8.7e-29 132.5 89 62.9
Sed0006971 Sechium edule HOM05D005605 ORTHO05D007615 1.1e-28 132.1 96 59.4
ECA248G2826 Erigeron canadensis HOM05D005605 ORTHO05D007615 1.9e-28 131.3 189 37.6
Hma1.2p1_0066F.1_g036390 Hydrangea macrophylla HOM05D005605 ORTHO05D007615 1.9e-28 131.3 170 38.8
HanXRQChr11g0343841 Helianthus annuus HOM05D005605 ORTHO05D007615 2.5e-28 131.0 167 40.1
CARHR112700 Cardamine hirsuta HOM05D005605 ORTHO05D007615 4.3e-28 130.2 90 60.0
Lsat_1_v5_gn_1_111380 Lactuca sativa HOM05D005605 ORTHO05D007615 7.4e-28 129.4 99 58.6
COL.COLO4_25933 Corchorus olitorius HOM05D005605 ORTHO05D007615 1.6e-27 128.3 93 57.0
Peaxi162Scf00016g00735 Petunia axillaris HOM05D005605 ORTHO05D007615 1.6e-27 128.3 175 36.0
PGSC0003DMG400000727 Solanum tuberosum HOM05D005605 ORTHO05D007615 6.3e-27 126.3 170 37.6
Migut.B00234 Erythranthe guttata HOM05D005605 ORTHO05D007615 1.8e-26 124.8 169 37.9
Sc18g0004450 Simmondsia chinensis HOM05D005605 ORTHO05D007615 3.1e-26 124.0 89 59.6
Solyc01g109630.4 Solanum lycopersicum HOM05D005605 ORTHO05D007615 1.2e-25 122.1 170 37.1
CAN.G1412.8 Capsicum annuum HOM05D005605 ORTHO05D007615 1.5e-25 121.7 170 36.5
Sopen01g051820 Solanum pennellii HOM05D005605 ORTHO05D007615 2.6e-25 120.9 170 37.6
ATR0772G053 Amborella trichopoda HOM05D005605 ORTHO05D007615 5.9e-25 119.8 88 59.1
unitig_0.g65 Utricularia gibba HOM05D005605 ORTHO05D007615 5.9e-25 119.8 92 54.3
Cpa.g.sc62.154 Carica papaya HOM05D005605 ORTHO05D007615 7.7e-25 119.4 188 36.2
Cfa005162 Carpinus fangiana HOM05D000256 ORTHO05D000119 1.7e-24 118.2 151 49.7
DCAR_001580 Daucus carota HOM05D005605 ORTHO05D007615 1.7e-24 118.2 88 56.8
MBI02_g03744_MAGBIO Magnolia biondii HOM05D005605 ORTHO05D007615 2.2e-24 117.9 175 39.4
AUR62011322 Chenopodium quinoa HOM05D005605 ORTHO05D007615 3.8e-24 117.1 86 55.8
CSS0044100 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 5.0e-24 116.7 175 38.9
CSS0010527 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 1.4e-23 115.2 175 38.3
Hund00267 Selenicereus undatus HOM05D005605 ORTHO05D007615 2.5e-23 114.4 88 54.5
AUR62016738 Chenopodium quinoa HOM05D005605 ORTHO05D007615 4.2e-23 113.6 87 51.7
Rhsim07G0028500 Rhododendron simsii HOM05D005605 ORTHO05D007615 6.1e-22 109.8 101 53.5
Manes.17G101300 Manihot esculenta HOM05D005605 ORTHO05D007615 7.4e-20 102.8 168 36.9
Ah.01g006280 Amaranthus hybridus HOM05D005605 ORTHO05D007615 4.5e-17 93.6 76 48.7
MSTRG.20083 Avicennia marina HOM05D005605 ORTHO05D007615 3.2e-15 87.4 133 36.1
Hma1.2p1_0066F.1_g036400 Hydrangea macrophylla HOM05D005605 ORTHO05D007615 4.7e-14 83.6 48 70.8
Ciclev10028120m.g Citrus clementina HOM05D005605 ORTHO05D007615 7.9e-14 82.8 131 36.6
Prupe.8G208500 Prunus persica HOM05D000256 ORTHO05D000119 3.9e-13 80.5 128 39.1
PSO541G1874 Papaver somniferum HOM05D005605 ORTHO05D007615 1.1e-12 79.0 162 34.0
PSO675G3023 Papaver somniferum HOM05D005605 ORTHO05D007615 2.6e-12 77.8 162 33.3
Sed0018177 Sechium edule HOM05D000256 ORTHO05D000119 2.6e-12 77.8 132 37.1
SEGI_23691 Sequoiadendron giganteum HOM05D005605 ORTHO05D007615 9.7e-12 75.9 98 40.8
MD05G1181700 Malus domestica HOM05D000256 ORTHO05D000119 1.3e-11 75.5 130 33.8
Thecc.01G232200 Theobroma cacao HOM05D000256 ORTHO05D000119 2.8e-11 74.3 128 38.3
Cfa002526 Carpinus fangiana HOM05D000256 ORTHO05D000119 7.0e-10 69.7 126 35.7
Cfa002525 Carpinus fangiana HOM05D000256 ORTHO05D000119 9.1e-10 69.3 126 34.9
Haze_01604 Corylus avellana HOM05D002400 ORTHO05D002568 1.2e-09 68.9 41 75.6
CsaV3_7G025600 Cucumis sativus L. HOM05D000256 ORTHO05D000119 1.2e-09 68.9 126 34.9
Duzib052G1004 Durio zibethinus HOM05D005605 ORTHO05D007615 1.2e-09 68.9 160 28.8
Prupe.8G208800 Prunus persica HOM05D000256 ORTHO05D000119 1.2e-09 68.9 119 35.3
CiPaw.04G107900 Carya illinoinensis HOM05D000256 ORTHO05D000119 2.6e-09 67.8 118 37.3
Dinv23519 Davidia involucrata HOM05D005605 ORTHO05D007615 2.6e-09 67.8 127 31.5
Ciclev10024107m.g Citrus clementina HOM05D000256 ORTHO05D000119 4.5e-09 67.0 126 31.7
Ciclev10023991m.g Citrus clementina HOM05D000256 ORTHO05D000119 7.7e-09 66.2 128 33.6
Sed0011653 Sechium edule HOM05D000256 ORTHO05D000119 1.0e-08 65.9 106 35.8
Manes.09G050200 Manihot esculenta HOM05D000256 ORTHO05D000119 1.7e-08 65.1 133 32.3
CDE04G1094 Ceratophyllum demersum HOM05D005605 ORTHO05D007615 5.0e-08 63.5 43 58.1
Gorai.004G058000 Gossypium raimondii HOM05D000256 ORTHO05D000119 6.5e-08 63.2 125 31.2
Sed0027303 Sechium edule HOM05D000256 ORTHO05D000119 6.5e-08 63.2 99 35.4
TWI14G0081 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 8.5e-08 62.8 130 33.1
FvH4_2g19740 Fragaria vesca HOM05D000256 ORTHO05D000119 1.1e-07 62.4 130 33.1
Manes.03G171700 Manihot esculenta HOM05D000256 ORTHO05D000119 1.1e-07 62.4 140 32.1
Duzib187G0996 Durio zibethinus HOM05D000256 ORTHO05D000119 1.5e-07 62.0 128 32.0
Gohir.A08G046400 Gossypium hirsutum HOM05D000256 ORTHO05D000119 1.5e-07 62.0 125 30.4
Sed0023202 Sechium edule HOM05D000256 ORTHO05D000119 1.5e-07 62.0 128 32.8
Sed0018315 Sechium edule HOM05D000256 ORTHO05D000119 1.9e-07 61.6 151 27.2
CsaV3_7G025560 Cucumis sativus L. HOM05D000256 ORTHO05D000119 2.5e-07 61.2 103 33.0
HPP92_026667 Vanilla planifolia HOM05D005605 ORTHO05D007615 2.5e-07 61.2 40 62.5
CsaV3_7G025640 Cucumis sativus L. HOM05D000256 ORTHO05D000119 3.2e-07 60.8 104 34.6
MBI02_g24399_MAGBIO Magnolia biondii HOM05D005605 ORTHO05D007615 3.2e-07 60.8 53 52.8
Duzib211G0476 Durio zibethinus HOM05D000256 ORTHO05D000119 5.5e-07 60.1 141 32.6
MD13G1110700 Malus domestica HOM05D000256 ORTHO05D000119 5.5e-07 60.1 137 26.3
Sed0000623 Sechium edule HOM05D000256 ORTHO05D000119 5.5e-07 60.1 142 34.5
Ciclev10007093m.g Citrus clementina HOM05D000256 ORTHO05D000119 7.2e-07 59.7 125 32.8
HanXRQChr03g0067601 Helianthus annuus HOM05D000256 ORTHO05D000119 7.2e-07 59.7 106 32.1
PGSC0003DMG400038118 Solanum tuberosum HOM05D000256 ORTHO05D000119 9.4e-07 59.3 110 30.0
TWI14G0459 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 9.4e-07 59.3 149 29.5
Gorai.004G058100 Gossypium raimondii HOM05D000256 ORTHO05D000119 1.2e-06 58.9 132 33.3
Thecc.01G232000 Theobroma cacao HOM05D000256 ORTHO05D000119 2.1e-06 58.2 149 31.5
Cfa004967 Carpinus fangiana HOM05D005605 ORTHO05D125917 2.7e-06 57.8 37 86.5
MELO3C021041.2 Cucumis melo HOM05D000256 ORTHO05D000119 2.7e-06 57.8 103 34.0
Ah.09g224270 Amaranthus hybridus HOM05D000256 ORTHO05D000119 3.6e-06 57.4 111 36.9
Gohir.D08G056950 Gossypium hirsutum HOM05D000256 ORTHO05D000119 4.7e-06 57.0 131 31.3
Sed0025080 Sechium edule HOM05D000256 ORTHO05D000119 4.7e-06 57.0 106 34.9
Cpa.g.sc12.57 Carica papaya HOM05D005430 ORTHO05D007814 6.1e-06 56.6 112 31.2
CsaV3_7G025590 Cucumis sativus L. HOM05D000256 ORTHO05D000119 6.1e-06 56.6 108 35.2
Sed0022717 Sechium edule HOM05D000256 ORTHO05D000119 6.1e-06 56.6 131 33.6
MSTRG.3399 Avicennia marina HOM05D000256 ORTHO05D000119 8.0e-06 56.2 123 32.5
Medtr4g123577 Medicago truncatula HOM05D000256 ORTHO05D000119 8.0e-06 56.2 133 31.6


User provided reference genes

Program Settings