Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02416 Corylus avellana HOM05D001848 ORTHO05D001295 3.9e-38 161.0 83 100.0
CiPaw.05G061200 Carya illinoinensis HOM05D001848 ORTHO05D001295 1.3e-17 92.8 72 72.2
QL11p042360 Quercus lobata HOM05D001848 ORTHO05D001295 1.9e-16 89.0 72 70.8
Prupe.8G102700 Prunus persica HOM05D001848 ORTHO05D001295 6.1e-15 84.0 85 64.7
MD10G1081500 Malus domestica HOM05D001848 ORTHO05D001295 1.0e-14 83.2 84 60.7
Atru.chr5.2942 Acer truncatum HOM05D001848 ORTHO05D001295 1.4e-14 82.8 82 59.8
Eucgr.I01246 Eucalyptus grandis HOM05D001848 ORTHO05D001295 1.8e-14 82.4 69 56.5
Rhsim05G0076600 Rhododendron simsii HOM05D001848 ORTHO05D001295 3.0e-14 81.6 65 66.2
Manes.15G148400 Manihot esculenta HOM05D001848 ORTHO05D001295 8.8e-14 80.1 66 62.1
Ciclev10029642m.g Citrus clementina HOM05D001848 ORTHO05D001295 1.2e-13 79.7 68 58.8
Thecc.02G122200 Theobroma cacao HOM05D001848 ORTHO05D001295 4.4e-13 77.8 70 60.0
TAR636G3109 Trochodendron aralioides HOM05D001848 ORTHO05D001295 4.4e-13 77.8 69 59.4
MD05G1070500 Malus domestica HOM05D001848 ORTHO05D001295 5.7e-13 77.4 79 60.8
Gohir.D13G046900 Gossypium hirsutum HOM05D001848 ORTHO05D001295 9.8e-13 76.6 72 58.3
GSVIVG01031677001 Vitis vinifera HOM05D001848 ORTHO05D001295 1.3e-12 76.3 64 65.6
Dinv44234 Davidia involucrata HOM05D000090 ORTHO05D001584 3.7e-12 74.7 71 57.7
Potri.T125404 Populus trichocarpa HOM05D001848 ORTHO05D001295 3.7e-12 74.7 67 61.2
Nn1g08244 Nelumbo nucifera HOM05D001848 ORTHO05D001295 4.8e-12 74.3 69 55.1
Lj3g0013447 Lotus japonicus HOM05D001848 ORTHO05D001295 1.1e-11 73.2 69 49.3
Prupe.8G103000 Prunus persica HOM05D001848 ORTHO05D001295 1.8e-11 72.4 65 64.6
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 3.1e-11 71.6 69 52.2
Gorai.013G052600 Gossypium raimondii HOM05D001848 ORTHO05D001295 4.1e-11 71.2 72 55.6
Potri.009G112553 Populus trichocarpa HOM05D001848 ORTHO05D001295 4.1e-11 71.2 67 58.2
Gohir.A13G048500 Gossypium hirsutum HOM05D001848 ORTHO05D001295 5.4e-11 70.9 72 55.6
COL.COLO4_32457 Corchorus olitorius HOM05D001848 ORTHO05D001295 7.0e-11 70.5 66 60.6
Psat7g184840 Pisum sativum HOM05D001848 ORTHO05D001295 9.1e-11 70.1 72 54.2
Rhsim12G0036400 Rhododendron simsii HOM05D001848 ORTHO05D001295 1.6e-10 69.3 69 52.2
Lalb_Chr01g0002711 Lupinus albus HOM05D001848 ORTHO05D001295 2.7e-10 68.6 69 49.3
Haze_11072 Corylus avellana HOM05D001848 ORTHO05D001295 3.5e-10 68.2 65 53.8
Potri.014G149900 Populus trichocarpa HOM05D001848 ORTHO05D001295 4.5e-10 67.8 71 59.2
Sed0004601 Sechium edule HOM05D001848 ORTHO05D001295 1.0e-09 66.6 72 54.2
Cpa.g.sc1200.2 Carica papaya HOM05D001848 ORTHO05D001295 1.3e-09 66.2 66 54.5
Cfa008554 Carpinus fangiana HOM05D001848 ORTHO05D001295 1.3e-09 66.2 65 50.8
VMungo1127G0744 Vigna mungo HOM05D001848 ORTHO05D001295 1.3e-09 66.2 68 48.5
Rhsim12G0036500 Rhododendron simsii HOM05D001848 ORTHO05D001295 2.2e-09 65.5 69 49.3
FvH4_4g11910 Fragaria vesca HOM05D001848 ORTHO05D001295 2.9e-09 65.1 70 51.4
FAN12G2359 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.9e-09 65.1 70 51.4
Lsat_1_v5_gn_5_118320 Lactuca sativa HOM05D001848 ORTHO05D001295 2.9e-09 65.1 70 50.0
Manes.11G113800 Manihot esculenta HOM05D001848 ORTHO05D001295 2.9e-09 65.1 71 50.7
FAN17G1858 Fragaria x ananassa HOM05D001848 ORTHO05D001295 5.0e-09 64.3 70 50.0
FAN22G1308 Fragaria x ananassa HOM05D001848 ORTHO05D001295 5.0e-09 64.3 70 50.0
CAN.G862.20 Capsicum annuum HOM05D001848 ORTHO05D001295 6.5e-09 63.9 67 49.3
FAN07G0789 Fragaria x ananassa HOM05D001848 ORTHO05D001295 6.5e-09 63.9 70 51.4
Prupe.1G179900 Prunus persica HOM05D001848 ORTHO05D001295 6.5e-09 63.9 68 48.5
Sc17g0001760 Simmondsia chinensis HOM05D001848 ORTHO05D001295 1.1e-08 63.2 69 49.3
TPR.G28533 Trifolium pratense HOM05D001848 ORTHO05D001295 1.5e-08 62.8 72 48.6
CiPaw.01G107800 Carya illinoinensis HOM05D001848 ORTHO05D001295 1.9e-08 62.4 66 51.5
FAN07G2298 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.9e-08 62.4 70 48.6
Glyma.11G120400 Glycine max HOM05D001848 ORTHO05D001295 1.9e-08 62.4 70 50.0
Nitab4.5_0005076g0020 Nicotiana tabacum HOM05D001848 ORTHO05D001295 1.9e-08 62.4 69 50.7
Ca_20849_v3 Cicer arietinum L. HOM05D001848 ORTHO05D001295 2.5e-08 62.0 72 47.2
ClCG07G016680 Citrullus lanatus HOM05D001848 ORTHO05D001295 2.5e-08 62.0 63 49.2
CANSAT11G0405 Cannabis sativa HOM05D001848 ORTHO05D001295 3.2e-08 61.6 67 47.8
Medtr4g069220 Medicago truncatula HOM05D001848 ORTHO05D001295 3.2e-08 61.6 72 45.8
Nn1g07985 Nelumbo nucifera HOM05D001848 ORTHO05D001295 3.2e-08 61.6 71 47.9
Nn1g08247 Nelumbo nucifera HOM05D001848 ORTHO05D001295 3.2e-08 61.6 71 47.9
Sabra14G0113300 Salix brachista HOM05D001848 ORTHO05D001295 3.2e-08 61.6 71 54.9
QL10p044006 Quercus lobata HOM05D001848 ORTHO05D001295 5.5e-08 60.8 72 48.6
RcHm_v2.0_Chr4g0409461 Rosa chinensis HOM05D001848 ORTHO05D001295 5.5e-08 60.8 70 45.7
TPR.G26815 Trifolium pratense HOM05D001848 ORTHO05D001295 5.5e-08 60.8 69 44.9
CiPaw.14G043500 Carya illinoinensis HOM05D001848 ORTHO05D001295 7.2e-08 60.5 69 55.1
HanXRQChr10g0307341 Helianthus annuus HOM05D001848 ORTHO05D001295 7.2e-08 60.5 70 45.7
Psat7g184880 Pisum sativum HOM05D001848 ORTHO05D001295 7.2e-08 60.5 70 47.1
Solyc01g066910.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 7.2e-08 60.5 69 47.8
DCAR_029929 Daucus carota HOM05D001848 ORTHO05D001295 9.4e-08 60.1 57 47.4
FvH4_2g17830 Fragaria vesca HOM05D001848 ORTHO05D001295 9.4e-08 60.1 66 50.0
FAN22G1115 Fragaria x ananassa HOM05D001848 ORTHO05D001295 9.4e-08 60.1 70 47.1
RcHm_v2.0_Chr6g0262971 Rosa chinensis HOM05D001848 ORTHO05D001295 9.4e-08 60.1 73 56.2
FvH4_2g08190 Fragaria vesca HOM05D001848 ORTHO05D001295 1.6e-07 59.3 75 56.0
FAN15G2768 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.6e-07 59.3 75 56.0
FAN24G2131 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.6e-07 59.3 75 56.0
Medtr7g052640 Medicago truncatula HOM05D001848 ORTHO05D001295 1.6e-07 59.3 62 46.8
PGSC0003DMG400011323 Solanum tuberosum HOM05D001848 ORTHO05D001295 1.6e-07 59.3 69 46.4
CAN.G129.19 Capsicum annuum HOM05D001848 ORTHO05D001295 2.1e-07 58.9 69 47.8
Glyma.12G045500 Glycine max HOM05D001848 ORTHO05D001295 2.1e-07 58.9 71 45.1
FvH4_4g11920 Fragaria vesca HOM05D001848 ORTHO05D001295 2.7e-07 58.5 70 47.1
FAN12G1139 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.7e-07 58.5 70 47.1
FAN12G1690 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.7e-07 58.5 70 47.1
Gohir.A10G139400 Gossypium hirsutum HOM05D001848 ORTHO05D001295 2.7e-07 58.5 61 47.5
Gohir.D10G127500 Gossypium hirsutum HOM05D001848 ORTHO05D001295 2.7e-07 58.5 61 47.5
Gorai.011G140600 Gossypium raimondii HOM05D001848 ORTHO05D001295 2.7e-07 58.5 61 47.5
Thecc.04G175600 Theobroma cacao HOM05D001848 ORTHO05D001295 2.7e-07 58.5 69 46.4
Gohir.A10G139300 Gossypium hirsutum HOM05D001848 ORTHO05D001295 3.6e-07 58.2 61 47.5
Peaxi162Scf00038g01729 Petunia axillaris HOM05D001848 ORTHO05D001295 3.6e-07 58.2 65 49.2
Phvul.011G047400 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 3.6e-07 58.2 69 44.9
Gorai.011G140500 Gossypium raimondii HOM05D001848 ORTHO05D001295 4.7e-07 57.8 61 47.5
Gorai.N003400 Gossypium raimondii HOM05D001848 ORTHO05D001295 4.7e-07 57.8 60 50.0
Lj1g0024594 Lotus japonicus HOM05D001848 ORTHO05D001295 4.7e-07 57.8 69 43.5
SGA_v2.0_scaffold29G12067 Striga asiatica HOM05D001848 ORTHO05D001295 4.7e-07 57.8 64 46.9
DCAR_021418 Daucus carota HOM05D001848 ORTHO05D001295 6.1e-07 57.4 65 40.0
MD05G1159700 Malus domestica HOM05D001848 ORTHO05D001295 6.1e-07 57.4 69 47.8
Medtr4g069170 Medicago truncatula HOM05D001848 ORTHO05D001295 6.1e-07 57.4 72 44.4
Nn7g37661 Nelumbo nucifera HOM05D001848 ORTHO05D001295 6.1e-07 57.4 69 42.0
Sc08g0000310 Simmondsia chinensis HOM05D001848 ORTHO05D001295 6.1e-07 57.4 73 45.2
Sopen01g028530 Solanum pennellii HOM05D001848 ORTHO05D001295 6.1e-07 57.4 58 48.3
COL.COLO4_26580 Corchorus olitorius HOM05D001848 ORTHO05D001295 8.0e-07 57.0 61 47.5
FAN15G3178 Fragaria x ananassa HOM05D001848 ORTHO05D001295 8.0e-07 57.0 62 48.4
FAN24G1271 Fragaria x ananassa HOM05D001848 ORTHO05D001295 8.0e-07 57.0 62 48.4
Gohir.A07G159300 Gossypium hirsutum HOM05D001848 ORTHO05D001295 8.0e-07 57.0 69 46.4
Rhsim01G0248600 Rhododendron simsii HOM05D001848 ORTHO05D001295 8.0e-07 57.0 69 44.9
RcHm_v2.0_Chr6g0282861 Rosa chinensis HOM05D001848 ORTHO05D001295 8.0e-07 57.0 62 48.4
TPR.G28530 Trifolium pratense HOM05D001848 ORTHO05D001295 8.0e-07 57.0 73 43.8
DCAR_021416 Daucus carota HOM05D001848 ORTHO05D001295 1.0e-06 56.6 62 40.3
Migut.D00731 Erythranthe guttata HOM05D001848 ORTHO05D001295 1.0e-06 56.6 45 55.6
FAN27G0192 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.0e-06 56.6 75 53.3
Cc04_g01540 Coffea canephora HOM05D001848 ORTHO05D001295 1.4e-06 56.2 62 40.3
Glyma.18G152400 Glycine max HOM05D001848 ORTHO05D001295 1.4e-06 56.2 62 43.5
Cfa010570 Carpinus fangiana HOM05D001848 ORTHO05D001295 1.8e-06 55.8 69 44.9
DCAR_018625 Daucus carota HOM05D001848 ORTHO05D001295 1.8e-06 55.8 64 45.3
HanXRQChr05g0141121 Helianthus annuus HOM05D001848 ORTHO05D001295 1.8e-06 55.8 43 53.5
ATR0686G063 Amborella trichopoda HOM05D001848 ORTHO05D001295 2.3e-06 55.5 65 49.2
Ciclev10017274m.g Citrus clementina HOM05D001848 ORTHO05D001295 2.3e-06 55.5 69 47.8
Haze_03503 Corylus avellana HOM05D001848 ORTHO05D001295 2.3e-06 55.5 69 44.9
PGSC0003DMG400002487 Solanum tuberosum HOM05D001848 ORTHO05D001295 2.3e-06 55.5 63 47.6
VMungo1383G1556 Vigna mungo HOM05D001848 ORTHO05D001295 2.3e-06 55.5 71 42.3
Duzib268G0398 Durio zibethinus HOM05D001848 ORTHO05D001295 3.0e-06 55.1 61 49.2
Glyma.08G344300 Glycine max HOM05D001848 ORTHO05D001295 3.0e-06 55.1 62 43.5
Psat0s3819g0040 Pisum sativum HOM05D001848 ORTHO05D001295 3.0e-06 55.1 64 42.2
PGR083G0807 Punica granatum HOM05D001848 ORTHO05D001295 3.0e-06 55.1 67 44.8
FvH4_2g17820 Fragaria vesca HOM05D001848 ORTHO05D001295 4.0e-06 54.7 57 47.4
FAN15G0003 Fragaria x ananassa HOM05D001848 ORTHO05D001295 4.0e-06 54.7 70 47.1
FAN15G2800 Fragaria x ananassa HOM05D001848 ORTHO05D001295 4.0e-06 54.7 57 47.4
FAN24G2491 Fragaria x ananassa HOM05D001848 ORTHO05D001295 4.0e-06 54.7 57 47.4
Lalb_Chr03g0041101 Lupinus albus HOM05D001848 ORTHO05D001295 5.2e-06 54.3 66 37.9
Nn1g08245 Nelumbo nucifera HOM05D001848 ORTHO05D001295 5.2e-06 54.3 41 58.5
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 5.2e-06 54.3 71 38.0
Peaxi162Scf00534g00001 Petunia axillaris HOM05D001848 ORTHO05D001295 5.2e-06 54.3 37 64.9
TWI36G0223 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 5.2e-06 54.3 65 38.5
Cpa.g.sc8.74 Carica papaya HOM05D001848 ORTHO05D001295 6.8e-06 53.9 63 46.0
Ciclev10022967m.g Citrus clementina HOM05D001848 ORTHO05D001295 6.8e-06 53.9 64 43.8
MELO3C017674.2 Cucumis melo HOM05D001848 ORTHO05D001295 6.8e-06 53.9 64 42.2
Gohir.D07G167100 Gossypium hirsutum HOM05D001848 ORTHO05D001295 6.8e-06 53.9 60 48.3
RcHm_v2.0_Chr6g0282851 Rosa chinensis HOM05D001848 ORTHO05D001295 6.8e-06 53.9 62 43.5
Actinidia23792 Actinidia chinensis HOM05D001848 ORTHO05D001295 8.8e-06 53.5 67 47.8
Phvul.008G137100 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 8.8e-06 53.5 62 45.2
Psat7g184920 Pisum sativum HOM05D001848 ORTHO05D001295 8.8e-06 53.5 74 41.9
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 8.8e-06 53.5 71 39.4
TPR.G28058 Trifolium pratense HOM05D001848 ORTHO05D001295 8.8e-06 53.5 72 45.8


User provided reference genes

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