Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 0.0e+00 2431.4 1341 100.0
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 3.2e-198 696.8 371 93.8
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 2.2e-130 471.5 835 40.8
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 1.2e-128 465.7 853 40.6
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 5.1e-127 460.3 856 38.6
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 1.9e-126 458.4 706 42.4
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 6.8e-124 449.9 859 38.1
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 3.4e-123 447.6 856 38.9
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 3.9e-119 434.1 698 43.0
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 5.1e-119 433.7 855 37.2
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 1.9e-118 431.8 859 36.7
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 4.0e-116 424.1 861 36.7
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.0e-112 410.2 868 37.3
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 5.6e-110 403.7 679 42.6
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.3e-109 402.5 663 42.4
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.3e-109 402.5 683 42.5
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 8.1e-109 399.8 857 35.6
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 3.1e-108 397.9 689 40.2
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 2.2e-106 391.7 674 39.5
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 3.8e-106 391.0 661 41.9
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 8.4e-106 389.8 661 41.8
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.2e-105 387.5 683 41.9
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.6e-104 385.6 611 41.4
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 2.8e-101 374.8 700 38.1
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 8.1e-101 373.2 873 35.3
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 5.3e-100 370.5 666 39.3
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 6.9e-100 370.2 640 39.8
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 4.5e-99 367.5 674 37.7
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.7e-98 365.5 662 38.7
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 4.9e-98 364.0 657 42.2
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 8.4e-98 363.2 668 40.3
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 1.6e-96 359.0 694 37.8
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 1.5e-94 352.4 356 53.7
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 2.8e-93 348.2 874 32.8
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 3.7e-93 347.8 683 37.0
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 8.2e-93 346.7 674 38.1
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.4e-92 345.9 676 38.5
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 4.1e-92 344.4 637 38.0
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 2.6e-91 341.7 680 35.9
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 4.5e-91 340.9 718 36.5
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 7.6e-91 340.1 868 32.3
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 7.6e-91 340.1 860 34.1
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 3.8e-90 337.8 655 36.3
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 6.5e-90 337.0 700 35.7
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 4.6e-88 330.9 881 32.0
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 4.6e-88 330.9 676 38.0
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 1.3e-87 329.3 668 36.8
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 5.1e-87 327.4 697 35.6
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 2.5e-86 325.1 667 36.0
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 3.3e-86 324.7 701 37.2
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.3e-85 322.8 687 35.2
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 3.7e-85 321.2 724 36.3
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 4.8e-85 320.9 871 32.8
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 6.3e-85 320.5 691 34.7
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 1.1e-84 319.7 644 35.2
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 2.4e-84 318.5 851 31.6
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 4.1e-84 317.8 706 34.4
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 6.9e-84 317.0 708 35.0
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 4.5e-83 314.3 701 34.2
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 5.9e-83 313.9 641 37.8
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 5.9e-83 313.9 384 48.2
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 7.7e-83 313.5 701 34.2
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 6.5e-82 310.5 680 36.6
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 8.5e-82 310.1 686 36.4
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 3.2e-81 308.1 699 33.9
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.2e-81 308.1 673 35.7
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.1e-80 305.4 644 34.6
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.1e-80 305.4 676 36.5
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 2.7e-80 305.1 693 33.9
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.7e-80 305.1 874 32.5
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 6.1e-80 303.9 686 35.9
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 2.3e-79 302.0 701 34.2
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.3e-79 302.0 632 35.6
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.8e-79 300.1 689 34.3
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.1e-78 299.7 868 31.6
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 5.7e-78 297.4 690 34.6
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 7.4e-78 297.0 667 34.8
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.8e-77 295.0 372 45.2
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.5e-75 289.3 734 32.6
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 2.6e-75 288.5 627 34.1
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 6.5e-74 283.9 631 33.1
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 1.9e-73 282.3 695 34.2
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 5.5e-73 280.8 688 34.0
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 1.2e-72 279.6 663 33.8
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 4.7e-72 277.7 655 34.8
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 6.1e-72 277.3 371 45.3
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 6.1e-72 277.3 644 33.1
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 3.0e-71 275.0 660 33.5
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 4.4e-70 271.2 643 35.3
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.8e-68 265.8 637 35.2
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.4e-68 265.4 377 43.5
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.1e-65 256.5 638 32.8
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.0e-63 250.0 681 31.4
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 6.7e-63 247.3 618 31.9
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.5e-62 246.1 838 29.6
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.3e-61 243.0 688 30.8
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 4.1e-60 238.0 645 31.3
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 2.9e-58 231.9 556 34.4
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 7.2e-57 227.3 654 30.7
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 3.7e-53 214.9 484 35.7
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.2e-51 209.9 468 33.3
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 1.2e-51 209.9 538 32.9
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 1.7e-50 206.1 713 29.7
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 2.5e-49 202.2 671 30.3
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.2e-49 200.7 360 39.7
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.2e-48 199.9 673 29.3
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.8e-47 196.1 680 30.0
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 4.0e-47 194.9 526 31.9
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 1.3e-45 189.9 606 31.5
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 7.0e-44 184.1 674 29.7
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 9.2e-44 183.7 148 69.6
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 9.2e-44 183.7 639 28.2
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 1.7e-42 179.5 702 26.8
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 3.8e-42 178.3 460 29.8
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.6e-40 172.9 509 32.0
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 4.7e-40 171.4 698 26.8
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 4.7e-40 171.4 698 26.8
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 2.0e-38 166.0 707 27.7
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.7e-35 155.6 173 46.2
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.7e-34 152.9 511 29.2
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 8.6e-34 150.6 157 63.7
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.6e-33 147.9 330 35.5
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 9.5e-33 147.1 214 39.7
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.7e-32 144.8 234 38.9
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.2e-29 136.0 486 30.5
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 3.0e-26 125.6 189 38.6
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.6e-26 124.4 228 36.8
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.1e-25 123.6 129 51.2
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.1e-25 123.6 182 39.0
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.9e-25 122.9 369 32.5
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 2.1e-24 119.4 218 34.9
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 8.9e-23 114.0 360 29.4
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 9.9e-22 110.5 456 26.3
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 9.9e-22 110.5 378 29.9
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 3.2e-20 105.5 297 30.6
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 3.1e-15 89.0 316 32.0
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.4e-14 85.1 85 54.1
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 1.3e-13 83.6 127 42.5
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.9e-13 81.6 94 50.0
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.4e-12 78.2 162 35.2
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 7.1e-12 77.8 342 25.1
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 3.5e-11 75.5 103 42.7
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.6e-11 75.1 146 35.6
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 7.8e-11 74.3 134 38.1
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 1.3e-10 73.6 45 68.9
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 3.9e-10 72.0 70 52.9
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 3.9e-10 72.0 70 52.9
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 3.9e-10 72.0 70 52.9
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.5e-09 70.1 48 64.6
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.1e-08 66.2 62 56.5
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.8e-08 65.9 46 60.9
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.6e-08 65.5 101 40.6
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 8.1e-08 64.3 188 29.3
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.8e-07 63.2 103 38.8
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 5.2e-07 61.6 166 32.5
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.5e-06 60.1 42 61.9


User provided reference genes

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