Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 6.0e-84 314.3 180 100.0
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 8.4e-78 293.9 177 97.7
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 9.7e-42 174.1 133 69.2
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 5.5e-37 158.3 136 59.6
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 1.2e-36 157.1 161 54.0
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 1.0e-35 154.1 141 58.2
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 1.4e-35 153.7 119 66.4
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 6.8e-35 151.4 142 57.7
QL11p052437 Quercus lobata HOM05D007970 ORTHO05D009943 8.8e-35 151.0 140 56.4
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 2.4e-32 142.9 121 62.8
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 3.1e-32 142.5 136 58.1
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 7.0e-32 141.4 121 62.0
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 7.0e-32 141.4 143 57.3
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 7.0e-32 141.4 121 62.0
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 1.2e-31 140.6 124 58.9
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 2.7e-31 139.4 135 56.3
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 7.7e-31 137.9 118 59.3
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 3.2e-29 132.5 122 59.0
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 1.2e-26 124.0 119 54.6
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 3.7e-25 119.0 136 49.3
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 5.4e-24 115.2 148 48.0
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 7.0e-24 114.8 148 48.6
Gohir.A03G206000 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.2e-23 114.0 159 47.8
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 2.0e-23 113.2 148 48.0
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 5.9e-23 111.7 142 48.6
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 2.3e-22 109.8 133 48.9
Gorai.005G255300 Gossypium raimondii HOM05D007970 ORTHO05D009943 6.6e-22 108.2 159 47.2
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 8.6e-22 107.8 129 48.1
Gohir.D02G227400 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.9e-21 106.7 159 46.5
Gohir.D01G161700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.5e-21 106.3 140 42.9
Gorai.002G200600 Gossypium raimondii HOM05D007970 ORTHO05D009943 2.5e-21 106.3 140 42.9
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 1.6e-20 103.6 116 49.1
Sabra04G0119900 Salix brachista HOM05D007970 ORTHO05D009943 2.1e-20 103.2 136 45.6
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 3.6e-20 102.4 133 46.6
CSS0030284 Camellia sinensis var. sinensis HOM05D007970 ORTHO05D009943 1.4e-19 100.5 116 50.9
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 9.8e-18 94.4 116 47.4
CANSAT25G3784 Cannabis sativa HOM05D007970 ORTHO05D009943 2.9e-17 92.8 138 43.5
ClCG02G012110 Citrullus lanatus HOM05D007970 ORTHO05D009943 2.9e-17 92.8 120 46.7
Actinidia21480 Actinidia chinensis HOM05D007970 ORTHO05D009943 1.4e-16 90.5 137 44.5
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 1.8e-16 90.1 92 52.2
Rhsim05G0052900 Rhododendron simsii HOM05D007970 ORTHO05D009943 5.4e-16 88.6 134 41.8
vmacro17329 Vaccinium macrocarpon HOM05D007970 ORTHO05D009943 1.6e-15 87.0 96 51.0
Hma1.2p1_0032F.1_g019140 Hydrangea macrophylla HOM05D007970 ORTHO05D009943 7.8e-15 84.7 123 48.0
MELO3C034691.2 Cucumis melo HOM05D007970 ORTHO05D009943 1.7e-14 83.6 114 46.5
PGSC0003DMG400018628 Solanum tuberosum HOM05D007970 ORTHO05D009943 2.3e-14 83.2 100 45.0
Rhsim11G0193700 Rhododendron simsii HOM05D007970 ORTHO05D009943 3.0e-14 82.8 129 39.5
Actinidia14361 Actinidia chinensis HOM05D007970 ORTHO05D009943 5.0e-14 82.0 121 45.5
Nitab4.5_0013642g0020 Nicotiana tabacum HOM05D007970 ORTHO05D009943 6.6e-14 81.6 92 50.0
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 8.6e-14 81.3 110 44.5
Oeu015553.1 Olea europaea HOM05D007970 ORTHO05D009943 3.3e-13 79.3 120 46.7
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 9.5e-13 77.8 119 44.5
Gohir.A01G170700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.6e-12 77.0 139 37.4
CAN.G588.103 Capsicum annuum HOM05D007970 ORTHO05D009943 6.2e-12 75.1 92 44.6
Solyc01g111820.2 Solanum lycopersicum HOM05D007970 ORTHO05D009943 1.1e-11 74.3 100 43.0
Oeu028958.1 Olea europaea HOM05D007970 ORTHO05D009943 1.4e-11 73.9 126 39.7
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 1.8e-11 73.6 114 40.4
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 8.9e-11 71.2 96 47.9
Actinidia20529 Actinidia chinensis HOM05D007970 ORTHO05D009943 1.5e-10 70.5 81 44.4
Sopen01g053860 Solanum pennellii HOM05D007970 ORTHO05D009943 1.5e-10 70.5 118 40.7
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.0e-10 70.1 91 50.5
Peaxi162Scf00362g00411 Petunia axillaris HOM05D007970 ORTHO05D009943 3.4e-10 69.3 90 46.7
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 3.4e-10 69.3 119 37.8
SGA_v2.0_scaffold32G13308 Striga asiatica HOM05D007970 ORTHO05D009943 3.4e-10 69.3 115 40.9
Lj9P400T40 Lonicera japonica HOM05D007970 ORTHO05D009943 4.4e-10 68.9 130 37.7
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 5.8e-10 68.6 76 51.3
Peaxi162Scf00078g00137 Petunia axillaris HOM05D007970 ORTHO05D009943 5.8e-10 68.6 94 42.6
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 5.8e-10 68.6 88 45.5
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 7.5e-10 68.2 85 49.4
Sc18g0006290 Simmondsia chinensis HOM05D007970 ORTHO05D009943 7.5e-10 68.2 81 43.2
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 9.8e-10 67.8 76 50.0
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 9.8e-10 67.8 75 48.0
Oeu045100.1 Olea europaea HOM05D007970 ORTHO05D009943 9.8e-10 67.8 91 44.0
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 1.3e-09 67.4 92 42.4
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 1.7e-09 67.0 100 42.0
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 1.7e-09 67.0 121 41.3
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 1.7e-09 67.0 90 43.3
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.7e-09 67.0 122 37.7
SEGI_37168 Sequoiadendron giganteum HOM05D007970 ORTHO05D009943 2.9e-09 66.2 67 46.3
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 4.9e-09 65.5 90 44.4
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 6.4e-09 65.1 114 40.4
Migut.B00057 Erythranthe guttata HOM05D007970 ORTHO05D009943 6.4e-09 65.1 98 40.8
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 1.1e-08 64.3 95 45.3
Lsat_1_v5_gn_4_72040 Lactuca sativa HOM05D007970 ORTHO05D009943 1.1e-08 64.3 78 50.0
Medtr1g112960 Medicago truncatula HOM05D007970 ORTHO05D009943 1.1e-08 64.3 85 49.4
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 1.1e-08 64.3 75 45.3
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 1.1e-08 64.3 75 45.3
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 1.1e-08 64.3 75 45.3
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 1.4e-08 63.9 97 45.4
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.4e-08 63.9 105 39.0
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 1.9e-08 63.5 122 37.7
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 1.9e-08 63.5 83 47.0
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.9e-08 63.5 88 46.6
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 2.4e-08 63.2 105 43.8
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 2.4e-08 63.2 119 39.5
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 3.2e-08 62.8 97 44.3
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 3.2e-08 62.8 97 44.3
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 3.2e-08 62.8 74 44.6
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 4.1e-08 62.4 97 44.3
Sed0004456 Sechium edule HOM05D007970 ORTHO05D009943 4.1e-08 62.4 86 46.5
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 4.1e-08 62.4 85 45.9
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 5.4e-08 62.0 95 44.2
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 5.4e-08 62.0 93 49.5
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 5.4e-08 62.0 121 38.0
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 7.0e-08 61.6 95 41.1
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 9.2e-08 61.2 83 47.0
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 9.2e-08 61.2 82 45.1
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 9.2e-08 61.2 69 47.8
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.2e-07 60.8 84 45.2
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 1.6e-07 60.5 86 44.2
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 2.7e-07 59.7 85 42.4
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 3.5e-07 59.3 92 39.1
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 4.6e-07 58.9 92 40.2
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 6.0e-07 58.5 92 44.6
TPR.G2416 Trifolium pratense HOM05D062211 ORTHO05D009943 6.0e-07 58.5 139 36.7
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 7.8e-07 58.2 74 44.6
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 1.0e-06 57.8 106 42.5
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 1.0e-06 57.8 78 44.9
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 2.3e-06 56.6 75 45.3
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 2.3e-06 56.6 75 48.0
Sp5g09790 Schrenkiella parvula HOM05D006872 ORTHO05D006261 3.0e-06 56.2 86 39.5
Sed0017981 Sechium edule HOM05D007970 ORTHO05D009943 3.0e-06 56.2 70 52.9
Migut.N01333 Erythranthe guttata HOM05D007970 ORTHO05D009943 3.9e-06 55.8 77 48.1
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 3.9e-06 55.8 76 40.8
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 3.9e-06 55.8 72 45.8
EL10Ac9g21340 Beta vulgaris HOM05D026051 ORTHO05D009943 5.0e-06 55.5 126 35.7
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 5.0e-06 55.5 107 39.3
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 5.0e-06 55.5 91 38.5
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 5.0e-06 55.5 76 43.4
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 6.6e-06 55.1 118 39.8
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 6.6e-06 55.1 76 48.7
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 6.6e-06 55.1 85 38.8
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 6.6e-06 55.1 120 32.5
Nitab4.5_0000079g0240 Nicotiana tabacum HOM05D007970 ORTHO05D009943 6.6e-06 55.1 67 44.8


User provided reference genes

Program Settings