Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 1.6e-97 359.4 171 100.0
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 4.0e-37 158.7 140 62.9
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.4e-34 150.2 88 81.8
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 3.1e-29 132.5 86 72.1
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 1.9e-26 123.2 83 68.7
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 1.9e-26 123.2 83 68.7
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 8.7e-24 114.4 82 63.4
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 2.5e-23 112.8 85 56.5
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 4.0e-21 105.5 83 50.6
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 4.0e-21 105.5 86 59.3
Haze_10744 Corylus avellana HOM05D022555 ORTHO05D009577 1.5e-20 103.6 113 54.9
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 2.2e-19 99.8 68 63.2
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 4.9e-19 98.6 76 55.3
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 6.5e-19 98.2 71 59.2
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 1.9e-18 96.7 81 56.8
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 2.5e-18 96.3 81 55.6
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 9.3e-18 94.4 66 62.1
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 1.6e-17 93.6 85 54.1
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.1e-17 93.2 76 56.6
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 3.5e-17 92.4 83 53.0
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 1.0e-16 90.9 106 44.3
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 1.0e-16 90.9 106 44.3
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 1.0e-16 90.9 84 53.6
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 2.3e-16 89.7 88 53.4
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 2.3e-16 89.7 76 53.9
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 3.0e-16 89.4 87 47.1
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 3.0e-16 89.4 66 60.6
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 3.0e-16 89.4 66 60.6
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 3.0e-16 89.4 66 60.6
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 5.1e-16 88.6 82 52.4
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 6.7e-16 88.2 64 57.8
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.1e-15 87.4 87 54.0
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 1.1e-15 87.4 89 53.9
Haze_21999 Corylus avellana HOM05D022555 ORTHO05D163883 1.1e-15 87.4 105 50.5
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 1.1e-15 87.4 65 60.0
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 1.5e-15 87.0 75 60.0
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 1.5e-15 87.0 86 52.3
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 1.9e-15 86.7 88 51.1
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 1.9e-15 86.7 87 51.7
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 2.5e-15 86.3 72 54.2
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 4.3e-15 85.5 74 52.7
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 9.6e-15 84.3 85 49.4
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 9.6e-15 84.3 59 62.7
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 2.1e-14 83.2 54 68.5
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 2.8e-14 82.8 74 52.7
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 2.8e-14 82.8 56 62.5
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 6.2e-14 81.6 82 45.1
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 6.2e-14 81.6 81 46.9
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 8.2e-14 81.3 85 48.2
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 8.2e-14 81.3 85 48.2
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.1e-13 80.9 70 55.7
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 1.1e-13 80.9 87 49.4
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.4e-13 80.5 76 51.3
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 1.8e-13 80.1 81 48.1
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 1.8e-13 80.1 68 52.9
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 2.4e-13 79.7 87 54.0
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 2.4e-13 79.7 58 56.9
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 3.1e-13 79.3 64 57.8
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 6.9e-13 78.2 85 45.9
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 1.5e-12 77.0 69 55.1
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 2.6e-12 76.3 85 44.7
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 3.4e-12 75.9 69 52.2
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 4.5e-12 75.5 57 52.6
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 4.5e-12 75.5 83 44.6
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 4.5e-12 75.5 83 44.6
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 5.8e-12 75.1 47 66.0
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 5.8e-12 75.1 47 66.0
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 5.8e-12 75.1 47 66.0
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 5.8e-12 75.1 88 40.9
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 7.6e-12 74.7 68 52.9
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.7e-11 73.6 78 47.4
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 2.2e-11 73.2 65 53.8
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 2.9e-11 72.8 84 48.8
Haze_16638 Corylus avellana HOM05D022555 ORTHO05D165059 2.9e-11 72.8 92 48.9
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 5.0e-11 72.0 70 51.4
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 5.0e-11 72.0 54 55.6
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 6.5e-11 71.6 83 45.8
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 6.5e-11 71.6 83 45.8
FAN15G1429 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.4e-10 70.5 64 54.7
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 1.9e-10 70.1 87 41.4
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 3.2e-10 69.3 85 44.7
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 4.2e-10 68.9 71 46.5
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 4.2e-10 68.9 76 44.7
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 5.5e-10 68.6 61 52.5
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 1.6e-09 67.0 83 44.6
Eucgr.G00244 Eucalyptus grandis HOM05D007709 ORTHO05D009577 2.3e-08 63.2 96 35.4
FAN27G0823 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.5e-07 60.5 52 53.8
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 4.3e-07 58.9 47 55.3
Haze_19125 Corylus avellana HOM05D022555 ORTHO05D165846 2.2e-06 56.6 38 73.7
FvH4_2g16730 Fragaria vesca HOM05D007709 ORTHO05D009577 2.8e-06 56.2 53 52.8
Eucgr.G00245 Eucalyptus grandis HOM05D007709 ORTHO05D009577 3.7e-06 55.8 57 42.1


User provided reference genes

Program Settings