Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 1.1e-209 733.0 353 100.0
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.8e-185 652.5 353 90.4
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 4.8e-170 601.3 353 82.7
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 2.3e-164 582.4 349 78.8
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.0e-163 579.3 350 79.4
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 1.4e-161 573.2 350 78.9
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 5.4e-161 571.2 353 79.0
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 9.2e-161 570.5 353 77.6
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 9.2e-161 570.5 352 78.1
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 3.5e-160 568.5 353 77.3
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 1.3e-159 566.6 349 77.9
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 1.7e-159 566.2 353 78.2
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 2.3e-159 565.8 358 76.0
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 5.0e-159 564.7 349 77.7
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 5.0e-159 564.7 350 77.7
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 5.0e-159 564.7 350 76.3
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 8.6e-159 563.9 353 77.3
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.1e-158 563.5 352 77.0
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.9e-158 562.8 353 75.9
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 1.9e-158 562.8 353 76.5
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 2.5e-158 562.4 350 77.1
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 3.3e-158 562.0 349 76.8
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 4.3e-158 561.6 349 78.2
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 5.6e-158 561.2 353 77.1
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 7.3e-158 560.8 382 73.3
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.1e-157 559.3 353 77.1
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 2.1e-157 559.3 350 77.1
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 4.7e-157 558.1 353 76.8
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 8.0e-157 557.4 353 81.0
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 8.0e-157 557.4 353 77.3
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 8.0e-157 557.4 353 76.2
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 1.0e-156 557.0 353 76.5
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 2.3e-156 555.8 349 75.9
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 5.2e-156 554.7 350 76.0
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 1.5e-155 553.1 353 75.6
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 2.0e-155 552.7 350 76.6
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 2.0e-155 552.7 349 74.8
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.6e-155 552.4 353 75.1
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 2.6e-155 552.4 353 75.4
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 3.4e-155 552.0 350 76.0
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.3e-154 550.1 353 75.6
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 1.3e-154 550.1 350 75.1
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 1.7e-154 549.7 353 74.8
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 4.9e-154 548.1 354 75.4
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 6.4e-154 547.7 353 74.5
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 6.4e-154 547.7 349 75.9
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 6.4e-154 547.7 353 74.2
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 6.4e-154 547.7 350 75.4
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 2.4e-153 545.8 353 74.8
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 2.4e-153 545.8 349 74.5
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 4.1e-153 545.0 350 76.6
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 7.0e-153 544.3 353 75.1
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 1.6e-152 543.1 353 73.7
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 3.5e-152 542.0 353 73.9
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 3.5e-152 542.0 352 74.7
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 4.6e-152 541.6 362 71.3
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.3e-151 540.0 344 76.5
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 1.3e-151 540.0 350 72.9
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 1.7e-151 539.7 349 74.2
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 1.7e-151 539.7 354 73.7
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 2.3e-151 539.3 353 74.2
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 3.9e-151 538.5 351 72.6
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 3.9e-151 538.5 350 74.9
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 4.3e-150 535.0 350 73.7
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 9.5e-150 533.9 344 73.5
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.6e-149 533.1 349 74.2
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.1e-149 532.7 349 74.2
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 3.6e-149 531.9 376 72.1
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 3.6e-149 531.9 349 73.6
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.2e-147 526.9 377 69.5
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 1.5e-147 526.6 349 72.2
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 4.4e-147 525.0 351 71.8
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 3.7e-146 521.9 351 73.5
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.7e-146 521.9 344 75.3
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 1.2e-141 506.9 353 70.0
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 3.6e-141 505.4 350 69.7
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 3.4e-139 498.8 350 70.0
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 9.8e-139 497.3 325 73.5
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 4.6e-136 488.4 349 65.9
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 6.8e-132 474.6 315 72.1
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 8.9e-132 474.2 354 67.5
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 8.9e-132 474.2 330 70.9
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 2.4e-129 466.1 355 66.5
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 1.1e-124 450.7 498 50.2
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 8.9e-124 447.6 350 64.0
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 9.9e-123 444.1 350 62.6
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 5.1e-119 431.8 343 60.6
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 3.6e-117 425.6 352 62.8
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 8.1e-117 424.5 359 61.3
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 3.1e-116 422.5 346 59.8
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 6.9e-116 421.4 298 68.1
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.5e-115 420.2 338 59.2
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.7e-114 416.8 351 59.8
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 8.1e-109 397.9 350 58.0
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 1.2e-104 384.0 356 57.9
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 9.6e-102 374.4 353 56.4
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 1.5e-99 367.1 348 50.9
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 1.9e-94 350.1 341 54.3
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 3.4e-91 339.3 189 85.7
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 1.9e-86 323.6 187 81.8
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 7.4e-86 321.6 187 80.2
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 6.9e-84 315.1 353 49.3
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.5e-83 313.9 353 51.8
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 4.5e-83 312.4 187 79.7
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 1.0e-82 311.2 195 74.9
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 2.9e-82 309.7 187 78.1
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.9e-82 309.7 195 75.4
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 4.2e-81 305.8 284 59.9
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.8e-79 300.4 187 75.4
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 3.0e-79 299.7 353 44.2
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 7.4e-78 295.0 190 73.7
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 6.9e-76 288.5 353 49.0
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 1.4e-73 280.8 314 49.7
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.9e-73 280.4 350 47.4
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 9.1e-68 261.5 163 78.5
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 4.5e-67 259.2 349 45.0
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.2e-64 251.1 151 75.5
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 3.0e-63 246.5 194 61.9
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 8.2e-61 238.4 163 73.0
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 8.2e-61 238.4 163 73.0
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.5e-59 233.0 154 74.0
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 1.8e-55 220.7 126 82.5
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 1.7e-50 204.1 127 74.0
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 1.1e-49 201.4 127 73.2
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.2e-48 198.0 130 72.3
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 8.9e-47 191.8 123 71.5
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 5.7e-46 189.1 131 71.0
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.6e-43 181.0 95 89.5
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.8e-39 167.5 182 51.1
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 2.7e-35 153.7 273 33.3
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.8e-31 141.0 81 79.0
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 4.0e-31 139.8 104 64.4
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 1.9e-25 120.9 108 54.6
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 9.5e-25 118.6 91 69.2
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 3.6e-16 90.1 58 72.4
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 2.2e-13 80.9 48 70.8
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 1.9e-12 77.8 81 48.1
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.2e-12 77.0 45 77.8


User provided reference genes

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