Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 0.0e+00 1206.8 641 100.0
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 7.2e-305 1050.0 649 88.3
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.3e-253 879.8 653 75.7
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 2.9e-237 825.5 658 69.9
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 1.3e-218 763.5 656 64.2
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.1e-218 761.5 642 65.4
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 1.1e-217 760.4 658 64.7
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 2.5e-217 759.2 659 64.2
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.8e-216 755.7 665 64.1
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 6.2e-216 754.6 664 63.1
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 8.1e-216 754.2 649 63.2
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 9.0e-215 750.7 656 63.6
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 1.5e-214 750.0 666 63.8
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 3.4e-214 748.8 636 64.8
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 1.9e-212 743.0 660 62.9
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 4.2e-212 741.9 658 62.2
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 6.7e-210 734.6 621 64.9
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 8.7e-210 734.2 647 64.1
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 4.3e-209 731.9 656 61.4
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 2.4e-207 726.1 654 61.6
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 6.9e-207 724.5 656 61.4
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 6.9e-207 724.5 644 62.3
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 3.4e-206 722.2 654 61.9
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 4.9e-205 718.4 644 62.1
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.4e-204 716.1 644 62.0
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 5.5e-204 714.9 630 63.8
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 1.2e-203 713.8 624 62.5
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 1.6e-203 713.4 627 62.4
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 3.5e-203 712.2 614 63.0
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 6.0e-203 711.4 633 62.9
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 8.7e-202 707.6 644 61.0
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 1.1e-201 707.2 643 61.4
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 9.6e-201 704.1 687 58.1
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 1.3e-200 703.7 625 62.6
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.8e-200 702.6 656 60.5
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.4e-199 700.3 696 58.9
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.4e-199 699.5 657 59.7
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 5.3e-199 698.4 629 61.2
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 1.0e-197 694.1 638 61.9
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.5e-196 689.5 653 59.4
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 1.2e-195 687.2 644 60.7
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 2.7e-195 686.0 643 58.5
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 1.8e-194 683.3 634 59.6
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 1.8e-194 683.3 633 60.5
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 8.7e-194 681.0 629 58.7
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 2.8e-192 676.0 635 61.6
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 3.7e-192 675.6 652 59.5
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 5.3e-191 671.8 656 59.1
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 5.3e-191 671.8 623 60.7
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 5.9e-190 668.3 632 58.2
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 7.6e-190 667.9 624 58.7
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 2.2e-189 666.4 652 58.7
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 2.9e-189 666.0 630 58.9
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 9.4e-188 661.0 623 58.6
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 3.6e-187 659.1 645 58.8
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 1.8e-186 656.8 628 58.3
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 4.3e-185 652.1 628 57.6
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 2.4e-183 646.4 631 56.7
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 9.1e-183 644.4 602 59.3
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 7.7e-182 641.3 656 56.4
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.0e-181 641.0 656 57.5
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 1.6e-179 633.6 642 55.8
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 4.7e-179 632.1 615 58.9
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 4.7e-179 632.1 615 58.9
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 6.1e-179 631.7 634 56.6
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 1.0e-178 630.9 637 56.4
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 1.8e-178 630.2 616 56.8
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 6.7e-178 628.2 638 56.9
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 8.8e-178 627.9 629 56.3
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.1e-177 627.5 644 56.5
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 3.3e-177 625.9 635 57.5
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 5.7e-177 625.2 612 58.5
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 9.7e-177 624.4 636 55.3
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.3e-176 624.0 657 56.8
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 1.3e-176 624.0 636 57.7
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-175 620.9 640 56.7
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.1e-175 620.9 627 57.9
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 1.4e-175 620.5 616 57.0
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 2.6e-174 616.3 664 55.0
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 4.5e-174 615.5 657 55.4
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 5.9e-174 615.1 623 55.7
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 3.8e-173 612.5 613 56.0
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 5.0e-173 612.1 653 56.2
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 8.5e-173 611.3 650 55.7
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 8.5e-173 611.3 650 55.7
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 4.7e-171 605.5 636 57.1
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 6.1e-171 605.1 632 55.9
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 3.9e-170 602.4 645 52.9
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 5.2e-170 602.1 642 56.2
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 5.2e-170 602.1 645 54.1
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 2.0e-169 600.1 637 57.6
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 2.6e-169 599.7 638 55.2
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 4.4e-169 599.0 639 55.1
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 2.2e-168 596.7 531 62.5
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 9.1e-167 591.3 645 55.2
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 1.0e-165 587.8 647 55.0
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 5.7e-161 572.0 623 53.3
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 2.2e-160 570.1 628 53.2
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 2.0e-158 563.5 622 52.9
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 8.5e-157 558.1 650 51.7
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 1.1e-156 557.8 623 52.5
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 5.2e-154 548.9 590 54.1
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 1.5e-153 547.4 640 50.2
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.8e-151 540.4 640 51.9
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 4.7e-147 525.8 625 53.0
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 4.9e-144 515.8 593 54.6
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 8.6e-141 505.0 624 51.6
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 3.7e-136 489.6 502 56.4
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 3.2e-127 459.9 612 44.4
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.9e-125 453.0 502 56.2
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 6.4e-120 435.6 615 45.9
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 1.1e-111 408.3 629 41.5
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.6e-110 404.4 666 40.2
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 9.3e-95 352.1 378 56.3
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 3.9e-93 346.7 401 52.6
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 4.8e-91 339.7 462 50.2
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 2.7e-86 323.9 294 58.8
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.9e-84 317.8 572 38.1
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 6.3e-75 286.2 390 44.6
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 7.7e-73 279.3 321 51.4
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.3e-69 267.7 381 44.1
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.4e-66 257.7 338 47.0
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 3.2e-63 247.3 235 59.1
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 1.4e-58 231.9 220 59.5
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.6e-57 227.6 212 57.5
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 5.0e-56 223.4 256 53.5
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 1.9e-55 221.5 353 38.0
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 1.2e-54 218.8 325 41.2
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 3.5e-49 200.7 118 84.7
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 1.9e-47 194.9 121 73.6
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 9.7e-44 182.6 202 46.5
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 7.7e-41 172.9 157 60.5
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.2e-38 165.6 159 57.9
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 5.2e-37 160.2 259 36.7
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 8.8e-37 159.5 213 46.0
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.3e-35 155.6 144 60.4
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 9.1e-34 149.4 125 58.4
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.0e-33 148.3 118 60.2
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 3.5e-33 147.5 162 53.7
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 3.5e-33 147.5 100 75.0
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 8.6e-32 142.9 191 44.0
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.5e-31 142.1 385 29.4
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.3e-31 141.0 187 50.3
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 7.5e-28 129.8 152 56.6
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 2.8e-27 127.9 150 54.0
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 6.3e-27 126.7 258 34.9
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 1.2e-22 112.5 111 50.5
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 1.2e-22 112.5 87 70.1
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 2.8e-22 111.3 87 70.1
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 4.0e-21 107.5 148 41.9
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 6.8e-21 106.7 103 51.5
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 2.0e-20 105.1 65 80.0
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 2.4e-18 98.2 174 46.0
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 2.0e-17 95.1 74 71.6
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 3.5e-17 94.4 70 68.6
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 2.3e-16 91.7 69 69.6
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 5.0e-16 90.5 73 69.9
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 1.5e-15 89.0 72 68.1
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 4.7e-14 84.0 178 31.5
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 4.0e-13 80.9 49 77.6
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 1.3e-11 75.9 48 75.0
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 9.2e-10 69.7 178 33.7
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 2.7e-09 68.2 61 60.7
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 1.0e-08 66.2 48 72.9


User provided reference genes

Program Settings