Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 2.7e-91 338.6 165 100.0
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 7.5e-89 330.5 165 97.6
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.3e-69 266.5 162 80.9
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 2.1e-67 259.2 159 80.5
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 5.7e-65 251.1 165 72.7
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 5.9e-62 241.1 157 74.5
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 3.9e-61 238.4 157 72.6
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 5.6e-60 234.6 159 74.2
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 5.6e-60 234.6 159 74.2
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.0e-57 226.1 159 70.4
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 3.4e-57 225.3 167 69.5
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 4.4e-57 224.9 159 69.2
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 9.8e-57 223.8 157 66.9
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 1.7e-56 223.0 156 69.9
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 2.2e-56 222.6 162 68.5
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 1.4e-55 219.9 159 69.8
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 3.2e-55 218.8 167 67.7
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 1.2e-54 216.9 156 71.2
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 5.0e-53 211.5 154 65.6
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 5.0e-53 211.5 155 65.2
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.5e-52 209.9 161 67.7
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 4.3e-52 208.4 164 65.9
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 9.5e-52 207.2 163 63.2
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 9.5e-52 207.2 155 64.5
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 9.5e-52 207.2 161 67.1
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.2e-51 206.8 137 72.3
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 1.6e-51 206.5 161 60.9
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.1e-51 206.1 162 66.7
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 4.7e-51 204.9 135 74.1
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 6.2e-51 204.5 155 63.9
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 6.2e-51 204.5 145 67.6
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 6.2e-51 204.5 145 67.6
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 1.1e-50 203.8 154 65.6
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.4e-50 203.4 160 67.5
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 2.3e-50 202.6 159 65.4
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 2.3e-50 202.6 160 66.2
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 2.3e-50 202.6 162 66.0
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 2.3e-50 202.6 163 64.4
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 5.2e-50 201.4 156 67.3
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 5.2e-50 201.4 134 73.1
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 5.2e-50 201.4 135 71.1
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 8.9e-50 200.7 130 77.7
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 2.0e-49 199.5 157 65.0
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 3.4e-49 198.7 139 71.2
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 4.4e-49 198.4 143 69.9
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 9.8e-49 197.2 144 69.4
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.1e-47 193.7 160 64.4
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 1.1e-47 193.7 155 61.9
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 1.2e-46 190.3 143 64.3
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 3.9e-45 185.3 131 71.8
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 6.6e-45 184.5 155 61.9
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.9e-44 183.0 160 53.8
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 5.6e-44 181.4 147 59.9
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 1.8e-42 176.4 175 56.0
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 2.3e-42 176.0 154 57.8
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 3.1e-42 175.6 181 55.8
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 1.3e-40 170.2 146 59.6
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 4.9e-40 168.3 173 59.0
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 8.4e-40 167.5 161 50.9
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.1e-39 167.2 152 55.3
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 3.2e-39 165.6 162 56.2
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 4.1e-39 165.2 164 51.8
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 4.1e-39 165.2 158 55.1
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 7.1e-39 164.5 130 61.5
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 9.2e-39 164.1 138 62.3
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 6.0e-38 161.4 156 58.3
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 7.8e-38 161.0 150 59.3
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 2.3e-37 159.5 150 55.3
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 2.3e-37 159.5 89 74.2
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 2.3e-37 159.5 178 49.4
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 3.0e-37 159.1 178 49.4
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 5.1e-37 158.3 98 77.6
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 2.5e-36 156.0 158 55.7
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 9.6e-36 154.1 131 61.1
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 4.7e-35 151.8 152 55.3
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 1.1e-34 150.6 158 50.0
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 1.4e-34 150.2 137 56.9
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 1.4e-34 150.2 158 50.0
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 3.1e-34 149.1 185 43.2
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 6.9e-34 147.9 144 55.6
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 8.9e-34 147.5 128 57.8
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 2.6e-33 146.0 140 55.0
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 4.4e-33 145.2 152 54.6
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 7.6e-33 144.4 149 52.3
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 1.7e-32 143.3 126 57.9
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 2.2e-32 142.9 137 53.3
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 4.9e-32 141.7 154 55.8
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 1.9e-31 139.8 155 48.4
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 4.2e-31 138.7 128 55.5
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 5.4e-31 138.3 136 55.9
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 1.6e-30 136.7 143 52.4
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.6e-30 136.7 129 57.4
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 1.0e-29 134.0 129 55.8
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.3e-29 133.7 118 61.0
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.7e-29 133.3 132 53.0
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.7e-29 133.3 132 53.0
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 2.3e-29 132.9 130 53.8
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 2.3e-29 132.9 130 53.8
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 2.3e-29 132.9 130 56.2
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 3.0e-29 132.5 127 56.7
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 3.0e-29 132.5 127 55.1
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 3.0e-29 132.5 124 54.8
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 3.9e-29 132.1 127 55.9
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 8.7e-29 131.0 147 53.7
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 2.5e-28 129.4 128 50.8
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.5e-28 129.4 127 55.9
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 2.5e-28 129.4 124 57.3
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 9.6e-28 127.5 147 43.5
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 6.2e-27 124.8 82 69.5
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 1.4e-26 123.6 148 48.6
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 4.0e-26 122.1 114 58.8
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.2e-25 120.6 83 62.7
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 9.9e-25 117.5 122 57.4
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.7e-24 116.7 164 42.1
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 4.9e-24 115.2 158 42.4
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 7.1e-23 111.3 150 46.0
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 1.2e-22 110.5 69 68.1
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.8e-21 106.7 103 54.4
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 3.9e-21 105.5 137 46.0
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 5.1e-21 105.1 130 49.2
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 6.7e-21 104.8 146 43.8
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 8.7e-21 104.4 117 51.3
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 1.9e-20 103.2 117 52.1
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 5.6e-20 101.7 117 51.3
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 5.6e-20 101.7 117 51.3
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 5.6e-20 101.7 117 51.3
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 5.6e-20 101.7 128 47.7
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.6e-19 100.1 125 46.4
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.6e-19 100.1 126 49.2
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 4.8e-19 98.6 114 50.0
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.4e-18 97.1 134 44.0
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.8e-18 96.7 140 39.3
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 2.2e-16 89.7 124 43.5
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 2.2e-16 89.7 83 60.2
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.1e-15 87.4 65 63.1
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 1.9e-15 86.7 53 64.2
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 3.2e-15 85.9 153 35.9
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 7.1e-15 84.7 114 45.6
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 8.7e-13 77.8 124 41.9
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 6.2e-11 71.6 65 56.9
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 8.1e-11 71.2 63 57.1
SEGI_30505 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 3.4e-09 65.9 80 38.8
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.2e-08 63.2 85 44.7
Zm00001eb199930 Zea mays HOM05D005114 ORTHO05D006301 2.2e-08 63.2 151 29.8
SEGI_36834 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 3.8e-08 62.4 81 38.3
SEGI_39678 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.1e-07 60.8 94 37.2


User provided reference genes

Program Settings