Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 3907.8 1990 100.0
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 3192.9 2004 81.5
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 3139.0 2008 80.9
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2715.3 1939 73.6
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2674.0 2011 69.5
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2667.1 2011 69.7
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2642.5 1935 71.5
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2627.0 2021 68.7
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2620.9 2018 69.5
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2619.0 2026 68.9
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2617.0 2012 69.3
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2603.2 1999 69.4
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2596.2 2004 68.6
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2585.1 2005 68.7
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2570.4 1993 68.4
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2562.3 2017 67.3
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2560.8 2020 67.5
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2551.5 2085 65.4
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2518.0 1850 71.2
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2509.6 1996 67.0
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2504.9 2002 66.2
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2502.2 1997 66.8
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2499.2 2013 66.2
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2479.1 1992 66.1
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2469.5 1995 65.4
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2452.2 2013 64.7
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 2446.0 2000 65.0
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2442.5 1915 67.9
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2441.0 2002 64.9
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2438.7 1912 67.2
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2433.3 2093 62.8
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2420.6 2015 64.1
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2412.1 1997 64.6
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2411.3 1955 66.2
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2406.7 2018 63.7
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 2404.8 2003 64.4
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2404.0 2019 63.7
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2371.7 2017 63.8
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2344.7 2141 60.9
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2340.8 1871 66.6
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2306.9 1931 64.5
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2305.0 1969 63.7
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2275.7 1935 62.6
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2250.3 1936 62.0
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2230.3 1932 61.7
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2222.2 1996 59.8
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2219.9 1934 60.8
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2217.6 2061 59.0
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2208.3 1999 58.8
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2202.6 2082 59.3
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2194.1 2080 58.7
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2176.0 1984 59.0
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2170.2 2007 58.3
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2158.6 2077 58.0
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2136.7 2006 58.9
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 2126.7 1961 59.2
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 2120.9 1927 60.7
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 2119.7 1787 63.1
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2118.6 1918 59.7
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2110.5 1933 58.9
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 2106.6 1991 57.2
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 2089.3 1922 58.8
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2083.9 1909 58.9
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 2082.4 1915 58.7
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 2080.8 1924 58.4
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 2080.8 1918 58.4
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2071.6 1917 58.2
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 2069.3 1910 58.7
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2065.0 2064 54.8
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2057.7 1917 58.0
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 2056.2 1919 58.0
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2048.9 1933 57.6
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 2044.6 1922 58.0
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 2044.6 1997 56.8
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 2035.8 1947 57.1
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 2027.3 1947 57.2
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2001.1 1910 57.3
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 2000.7 1938 57.5
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1997.2 1931 56.8
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1991.9 1928 56.5
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1949.9 1939 57.1
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1892.5 2072 51.9
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1823.9 1616 61.0
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1724.1 1550 60.1
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1679.8 1348 67.1
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1586.6 1775 50.6
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1551.6 1917 47.8
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1477.6 1161 66.1
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1242.6 2167 38.5
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1172.9 1959 38.1
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1166.4 2199 36.9
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1107.4 793 71.2
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1105.5 2147 35.7
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.2e-257 894.8 799 60.8
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 8.0e-254 882.1 673 66.6
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 1.8e-250 870.9 1393 40.9
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 1.0e-248 865.1 783 60.5
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 4.7e-246 856.3 1148 44.8
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 2.3e-237 827.4 2084 31.5
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 6.6e-224 782.7 749 58.3
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 4.8e-206 723.4 730 56.0
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 1.9e-194 684.9 814 51.5
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 4.0e-136 491.1 386 62.4
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 6.2e-129 467.2 359 63.8
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 7.1e-109 400.6 493 49.5
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.7e-86 326.2 264 65.9
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 1.5e-79 303.1 223 70.0
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.0e-71 276.2 218 64.2
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 6.9e-64 251.1 280 48.2
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 3.2e-61 242.3 272 47.8
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 3.9e-59 235.3 313 47.0
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 7.7e-55 221.1 124 86.3
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 3.3e-42 179.1 274 42.3
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 4.4e-42 178.7 198 47.0
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 2.6e-34 152.9 127 59.1
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 1.9e-29 136.7 121 57.9
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 1.2e-28 134.0 93 77.4
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 2.4e-24 119.8 123 58.5
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 7.8e-23 114.8 111 51.4
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 8.0e-20 104.8 475 24.6
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 2.9e-17 96.3 93 59.1
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 4.1e-16 92.4 61 70.5
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 7.0e-16 91.7 68 64.7
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 1.0e-14 87.8 71 59.2
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 3.9e-14 85.9 69 58.0
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 2.3e-11 76.6 98 43.9
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 3.1e-11 76.3 69 60.9
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 4.4e-10 72.4 85 49.4
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 2.7e-07 63.2 71 50.7
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 6.0e-07 62.0 78 48.7


User provided reference genes

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