Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 8.9e-84 313.5 156 100.0
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 3.2e-65 251.9 156 82.1
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 9.9e-59 230.3 156 73.1
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 1.7e-58 229.6 156 71.8
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 1.1e-57 226.9 156 70.5
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 1.3e-55 219.9 156 69.2
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 8.7e-55 217.2 156 67.3
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 1.1e-54 216.9 156 71.2
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 9.6e-54 213.8 156 68.6
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 1.3e-53 213.4 155 68.4
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 1.3e-53 213.4 234 53.4
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.3e-53 213.4 152 67.1
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 1.4e-52 209.9 156 67.9
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 1.8e-52 209.5 156 66.0
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 1.8e-52 209.5 155 70.3
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 2.4e-52 209.1 156 66.0
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 2.4e-52 209.1 156 67.3
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 3.1e-52 208.8 156 64.7
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 6.9e-52 207.6 156 67.3
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 9.0e-52 207.2 142 73.2
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 9.0e-52 207.2 142 73.2
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 9.0e-52 207.2 153 68.6
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 2.0e-51 206.1 146 69.2
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 5.8e-51 204.5 146 70.5
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 5.8e-51 204.5 152 64.5
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 9.9e-51 203.8 156 67.3
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 1.3e-50 203.4 156 65.4
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 1.3e-50 203.4 148 69.6
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.7e-50 203.0 153 66.7
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 2.2e-50 202.6 156 68.6
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 2.9e-50 202.2 145 69.7
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 3.8e-50 201.8 156 66.0
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 4.9e-50 201.4 155 62.6
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 4.9e-50 201.4 138 71.7
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 4.9e-50 201.4 138 71.7
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 8.4e-50 200.7 156 66.7
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 1.1e-49 200.3 152 65.1
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.4e-49 199.9 144 67.4
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 1.9e-49 199.5 153 63.4
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 2.4e-49 199.1 144 67.4
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 2.4e-49 199.1 155 67.7
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 4.2e-49 198.4 138 70.3
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 4.2e-49 198.4 156 64.1
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 9.3e-49 197.2 155 63.9
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 2.1e-48 196.1 152 67.1
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 4.6e-48 194.9 149 61.7
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 4.6e-48 194.9 155 65.2
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 4.6e-48 194.9 156 64.1
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 6.0e-48 194.5 142 69.7
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 6.0e-48 194.5 189 54.0
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 7.9e-48 194.1 155 66.5
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 1.0e-47 193.7 155 61.9
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 1.3e-47 193.4 157 63.1
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.8e-47 193.0 147 61.9
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 1.8e-47 193.0 155 65.2
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 2.3e-47 192.6 157 64.3
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 3.0e-47 192.2 155 61.9
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 3.9e-47 191.8 156 64.1
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 5.1e-47 191.4 152 61.2
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 4.3e-46 188.3 144 66.0
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 5.6e-46 188.0 151 61.6
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 9.6e-46 187.2 149 61.1
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 9.6e-46 187.2 146 65.8
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 2.1e-45 186.0 151 60.9
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 2.8e-45 185.7 140 68.6
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 2.8e-45 185.7 142 65.5
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 4.8e-45 184.9 156 61.5
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 6.2e-45 184.5 140 67.9
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 6.2e-45 184.5 150 59.3
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 6.2e-45 184.5 156 61.5
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 6.2e-45 184.5 156 61.5
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-44 183.0 146 63.7
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-44 183.0 146 63.7
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-44 183.0 146 63.7
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 1.8e-44 183.0 149 61.1
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 2.4e-44 182.6 156 59.6
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 2.4e-44 182.6 155 57.4
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 6.9e-44 181.0 156 59.6
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 9.0e-44 180.6 140 67.9
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 2.0e-43 179.5 146 63.7
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 4.5e-43 178.3 146 63.7
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 4.5e-43 178.3 140 67.1
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 1.0e-42 177.2 156 58.3
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 1.7e-42 176.4 156 60.3
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 2.2e-42 176.0 143 65.0
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 6.5e-42 174.5 140 65.0
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 1.4e-41 173.3 140 65.7
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 3.2e-41 172.2 156 60.3
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.6e-40 169.9 161 57.8
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 4.6e-40 168.3 140 62.9
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 4.6e-40 168.3 140 63.6
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 4.6e-40 168.3 112 73.2
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 1.3e-39 166.8 140 64.3
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.3e-39 166.8 124 65.3
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 3.0e-39 165.6 155 53.5
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 9.0e-36 154.1 134 65.7
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 2.6e-35 152.5 150 51.3
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 5.9e-35 151.4 114 61.4
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.3e-34 150.2 139 55.4
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 6.5e-34 147.9 155 49.0
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 8.5e-34 147.5 139 53.2
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 1.6e-32 143.3 156 52.6
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 1.6e-32 143.3 99 69.7
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 2.0e-30 136.3 152 52.6
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 2.0e-30 136.3 105 65.7
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 3.3e-30 135.6 154 49.4
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 1.3e-29 133.7 99 68.7
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 1.7e-29 133.3 99 65.7
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 6.3e-29 131.3 140 53.6
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.4e-28 130.2 155 51.0
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 3.1e-28 129.0 98 68.4
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 2.6e-27 125.9 99 65.7
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 4.5e-27 125.2 99 65.7
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 5.9e-27 124.8 155 45.8
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 6.5e-26 121.3 88 64.8
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 5.5e-25 118.2 103 59.2
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 1.2e-24 117.1 140 41.4
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 1.6e-24 116.7 140 52.9
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 1.6e-24 116.7 140 52.9
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 7.4e-22 107.8 94 56.4
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 7.4e-22 107.8 151 41.1
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 3.1e-20 102.4 87 57.5
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 4.1e-20 102.1 92 57.6
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 7.0e-20 101.3 99 55.6
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 1.5e-19 100.1 62 74.2
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 2.3e-15 86.3 73 60.3
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 5.0e-10 68.6 96 42.7
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 5.0e-10 68.6 67 52.2
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 2.7e-08 62.8 108 40.7


User provided reference genes

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